O2k-Publications: Theoretical Background: Difference between revisions
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Revision as of 16:14, 5 June 2015
O2k-Publications: Theoretical Background
Back to: O2k-Publications: Topics
Was published in year | Has title | |
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MiPNet18.10 O2k-Specifications | 2024-03-26 | O2k-specifications for respirometry and comprehensive OXPHOS analysis. |
Gnaiger 2024 MitoFit | 2024 | Gnaiger E (2024) Addressing the ambiguity crisis in bioenergetics and thermodynamics. MitoFit Preprints 2024.3. https://doi.org/10.26124/mitofit:2024-0003 |
Gnaiger 2020 BEC MitoPathways | 2020 | Gnaiger E (2020) Mitochondrial pathways and respiratory control. An introduction to OXPHOS analysis. 5th ed. Bioenerg Commun 2020.2. https://doi.org/10.26124/bec:2020-0002 |
E-L coupling efficiency | 2020 | Gnaiger E (2020) Biochemical coupling efficiency: from 0 to <1. Mitochondr Physiol Network (2015-01-18) last update 2020-11-12. |
P-L control efficiency | 2020 | Gnaiger E (2020) Cell ergometry: OXPHOS-control and ET-coupling efficiency. Mitochondr Physiol Network (2015-01-18) last update 2020-11-12. |
OXPHOS capacity | 2020 | Gnaiger E (2020) OXPHOS P and State 3. Mitochondr Physiol Network (2016-07-15) last update 2020-11-08. |
Flux control efficiency | 2020 | Gnaiger E (2020) Flux control efficiency: normalization of mitochondrial respiration. Mitochondr Physiol Network 2016-03-20; updated 2020-11-10. |
Residual oxygen consumption | 2020 | Gnaiger E (2020) Residual oxygen consumption: a baseline correction of mitochondrial respiration. Mitochondr Physiol Network (2016-01-28) last update 2020-11-11. |
P/E control ratio | 2020 | Gnaiger E (2020) P/E from mouse to man. Mitochondr Physiol Network (2014-05-20) last update 2020-11-12. |
Electron transfer pathway | 2020 | Gnaiger E (2017) Electron transfer pathway versus electron transport chain. Mitochondr Physiol Network (2010-08-17) last update 2020-06-02. |
LEAK respiration | 2019 | Gnaiger E (2019) LEAK respiration: concept-linked terminology of respiratory states. Mitochondr Physiol Network 2019-01-24. |
Electron-transfer-pathway state | 2019 | Gnaiger E (2019) ET-pathway states. Mitochondr Physiol Network 2019-06-11 (last edit since 2016-11-08). |
Force | 2018 | Gnaiger E (2018) Gibbs energy or Gibbs force? Mitochondr Physiol Network 2018-08-07. |
Categories of SUIT protocols | 2017 | Gnaiger E (2017) Categories of SUIT protocols and ETS pathway control states. MiPNet 2017-03-12; original 2016-03-20; edited 2016-08-21. |
ET capacity | 2017 | Gnaiger E (2017) Why ET capacity, why not State 3u? Mitochondr Physiol Network (2014-07-06) last update 2020-11-10. |
Garlid 2016 Handb Exp Pharmacol | 2016 | Garlid AO, Polson JS, Garlid KD, Hermjakob H, Ping P (2016) Equipping physiologists with an informatics tool chest: toward an integerated mitochondrial phenome. Handb Exp Pharmacol 240:377-401. |
Coupling-control protocol | 2015 | Gnaiger E (2015) From PCP to CCP. Mitochondr Physiol Network 2015-01-11. |
Cell ergometry | 2015 | Gnaiger E (2015) Cell ergometry and OXPHOS. Mitochondr Physiol Network 2015-01-18. |
MiPNet19.20 Cytochrome c control efficiency | 2014-04-21 | Cytochrome c control efficiency: a test for outer mt-membrane integrity. |
Respiratory complexes | 2014 | Gnaiger E (2014) Respiratory Complexes - more than five. Mitochondr Physiol Network 2014-07-07. |
Gnaiger 2014 MitoPathways | 2014 | Gnaiger E (2014) Mitochondrial pathways and respiratory control. An introduction to OXPHOS analysis. 4th ed. Mitochondr Physiol Network 19.12. Oroboros MiPNet Publications, Innsbruck:80 pp. β see 5th edition: Gnaiger 2020 BEC MitoPathways. |
Iglesias-Gonzalez 2014 PhD Thesis | 2014 | Iglesias-Gonzalez J (2014) Neurotoxicity induced by oxidative stress and aluminium in relation to Parkinsonβs disease: a mitochondrial bioenergetic approach by high-resolution respirometry. PhD Thesis 1-242. |
Mitochondrial marker | 2014 | Gnaiger E (2014) Mitochondrial markers and expression of mitochondrial respiration. Mitochondr Physiol Network 2014-07-26. |
Normothermia | 2014 | Gnaiger E (2014) Normothermia: from endotherms to ectotherms. Mitochondr Physiol Network 2014-04-18. |
Noncoupled respiration | 2014 | Gnaiger E (2014) Is respiration uncoupled - noncoupled - dyscoupled? Mitochondr Physiol Network 2014-04-18. |
Solutions | 2014 | Gnaiger E (2014) Stock-, storage- and working-solutions: How do they differ? Mitochondr Physiol Network 2014-04-17. |
Basal respiration | 2013 | Gnaiger E (2013) Basal respiration in physiology, cellular bioenergetics and mitochondrial physiology. Mitochondr Physiol Network 2013-07-07. |
Diapause | 2012 | Hand SC (2012) Diapause versus quiescence. Mitochondr Physiol Network 2012-11-21. |
Sirtuins | 2012 | Pesta D (2012) Sirtuin family. Mitochondr Physiol Network 2012-06-29. |
Mitophagy | 2012 | Pesta D (2012) Mitochondrial mitophagy. Mitochondr Physiol Network 2012-05-22. |
Larsen 2012 Eur J Appl Physiol | 2012 | Larsen FJ, Ekblom B (2012) The low intracellular oxygen tension during exercise is a function of limited oxygen supply and high mitochondrial oxygen affinity. Eur J Appl Physiol 112:3935-6. |
Palmeira 2012 Methods Mol Biol | 2012 | Palmeira CM, Rolo AP (2012) Mitochondrial membrane potential (ΞΞ¨) fluctuations associated with the metabolic states of mitochondria. Methods Mol Biol 810:89-101. |
Figueira 2012 Methods Mol Biol | 2012 | Figueira TR, Melo DR, Vercesi AE, Castilho RF (2012) Safranine as a fluorescent probe for the evaluation of mitochondrial membrane potential in isolated organelles and permeabilized cells. Methods Mol Biol 810:103-17. |
Affourtit 2012 Methods Mol Biol | 2012 | Affourtit C, Quinlan CL, Brand MD (2012) Measurement of proton leak and electron leak in isolated mitochondria. Methods Mol Biol 810:165-82. |
Song 2011 Free Radical Biol Med | 2011 | Song Y, Buettner GR (2011) Thermodynamic and kinetic considerations for the reaction of semiquinone radicals to form superoxide and hydrogen peroxide. Free Radical Biol Med 919-62. |
Chinopoulos 2011 Methods Mol Biol | 2011 | Chinopoulos C, Zhang SF, Thomas B, Ten V, Starkov AA (2011) Isolation and functional assessment of mitochondria from small amounts of mouse brain tissue. Methods Mol Biol 793:311-24. |
Perevoshchikova 2009 Biochemistry (Mosc) | 2009 | Perevoshchikova IV, Sorochkina AI, Zorov DB, Antonenko YN (2009 ) Safranine O as a fluorescent probe for mitochondrial membrane potential studied on the single particle level and in suspension. Biochemistry (Mosc) 74:663-71. |
Gnaiger 2007 MitoPathways | 2007 | Gnaiger E ed (2007) Mitochondrial pathways and respiratory control. 1st ed. Oroboros MiPNet Publications, Innsbruck:96 pp. ISBN 978-3-9502399-0-4. β see 5th edition: Gnaiger 2020 BEC MitoPathways. |
Gnaiger 1994 BTK-207 | 1994 | Gnaiger E, Wyss M (1994) Chemical forces in the cell: Calculation for the ATP system. In: What is Controlling Life? (Gnaiger E, Gellerich FN, Wyss M, eds) Modern Trends in BioThermoKinetics 3. Innsbruck Univ Press:207-12. |
Gnaiger 1994 BTK | 1994 | Gnaiger E, Gellerich FN, Wyss M (1994) What is controlling life? 50 years after Erwin SchrΓΆdinger's What is life? Modern trends in BiothermoKinetics 3, Innsbruck Univ Press:336 pp. ISBN 10: 3901249176, ISBN 13: 9783901249174 |
Gnaiger 1994 BTK-62 | 1994 | Gnaiger E (1994) Negative entropy for living systems: controversy between Nobel Laureates SchrΓΆdinger, Pauling and Perutz. In: What is Controlling Life? (Gnaiger E, Gellerich FN, Wyss M, eds) Modern Trends in BioThermoKinetics 3. Innsbruck Univ Press: 62-70. |
Gnaiger 1993 Hypoxia | 1993 | Gnaiger E (1993) Efficiency and power strategies under hypoxia. Is low efficiency at high glycolytic ATP production a paradox? In: Surviving hypoxia: Mechanisms of control and adaptation. Hochachka PW, Lutz PL, Sick T, Rosenthal M, Van den Thillart G (eds) CRC Press, Boca Raton, Ann Arbor, London, Tokyo:77-109. |
Gnaiger 1993 Pure Appl Chem | 1993 | Gnaiger E (1993) Nonequilibrium thermodynamics of energy transformations. Pure Appl Chem 65:1983-2002. http://dx.doi.org/10.1351/pac199365091983 |
Von Stockar 1993 Biochim Biophys Acta | 1993 | Von Stockar U, Gustafsson L, Larsson C, Marison I, Tissot P, Gnaiger E (1993) Thermodynamic considerations in constructing energy balances for cellular growth. Biochim Biophys Acta 1183:221-40. https://doi.org/10.1016/0005-2728(93)90225-5 |
Gnaiger 1992 Funct Ecol | 1992 | Gnaiger E (1992) Optimum efficiency of energy transformation and the evolution of catabolic pathways. Funct Ecol 6:234-41. |
Gnaiger 1990 Biochim Biophys Acta | 1990 | Gnaiger E, Kemp RB (1990) Anaerobic metabolism in aerobic mammalian cells: information from the ratio of calorimetric heat flux and respirometric oxygen flux. Biochim Biophys Acta 1016:328-32. |
Gnaiger 1990 Thermochim Acta | 1990 | Gnaiger E (1990) Concepts on efficiency in biological calorimetry and metabolic flux control. Thermochim Acta 172:31-52. https://doi.org/10.1016/0040-6031(90)80557-F |
Haller 1990 CYCLOBIOS Kinetics | 1990 | Haller T, Gnaiger E (1990) Kinetic control and reaction pressure in steady state coupled mitochondria. CYCLOBIOS Newsletter 4:63-6. |
Gnaiger 1984 Oecologia | 1984 | Gnaiger E, Bitterlich G (1984) Proximate biochemical proposition and caloric content calculated from elemental CHN analysis: a stoichiometric concept. Oecologia 62:289-98. |
Rottenberg 1984 J Membr Biol | 1984 | Rottenberg H (1984) Membrane potential and surface potential in mitochondria: uptake and binding of lipophilic cations. J Membr Biol 81:127-38. |
Gnaiger 1983 POS-EnergEquivalents | 1983 | Gnaiger E (1983) Calculation of energetic and biochemical equivalents of respiratory oxygen consumption. In: Polarographic Oxygen Sensors. Aquatic and Physiological Applications. Gnaiger E, Forstner H (eds), Springer, Berlin, Heidelberg, New York:337-45. |
Forstner 1983 POS | 1983 | Forstner H, Gnaiger E (1983) Calculation of equilibrium oxygen concentration. In: Gnaiger E, Forstner H (eds) Polarographic oxygen sensors. Aquatic and physiological applications. Springer, Berlin, Heidelberg, New York:321-33. |
Gnaiger 1983 POS-pO2 | 1983 | Gnaiger E (1983) Calculation of pO2 in water equilibrated with a mixture of room air and nitrogen. In: Polarographic Oxygen Sensors. Aquatic and Physiological Applications. Gnaiger E, Forstner H (eds), Springer, Berlin, Heidelberg, New York:334-6. |
Gnaiger 1983 J Exp Zool | 1983 | Gnaiger E (1983) Heat dissipation and energetic efficiency in animal anoxibiosis. Economy contra power. J Exp Zool 228:471-90. |
Hitchman 1983 POS Membrane | 1983 | Hitchman ML, Gnaiger E (1983) A thermodynamic consideration of permeability coefficients of membranes. In: Polarographic Oxygen Sensors. Aquatic and Physiological Applications. Gnaiger E, Forstner H (eds), Springer, Berlin, Heidelberg, New York:31-6. |
Gnaiger 1983 Springer POS | 1983 | Gnaiger E, Forstner H, eds (1983) Polarographic Oxygen Sensors. Aquatic and Physiological Applications. Springer, Berlin, Heidelberg, New York:370 pp. |
Gnaiger 1983 POS symbols | 1983 | Gnaiger E (1983) Symbols and units: toward standardization. In: Polarographic Oxygen Sensors. Aquatic and Physiological Applications. Gnaiger E, Forstner H (eds), Springer, Berlin, Heidelberg, New York:352-8. |
Hale 1983 POS Stability | 1983 | Hale JM (1983) Factors influencing the stability of polarographic oxygen sensors. In: Polarographic Oxygen Sensors. Aquatic and Physiological Applications. Gnaiger E, Forstner H (eds), Springer, Berlin, Heidelberg, New York: 3-17. |
Hitchman 1983 POS Calib | 1983 | Hitchman ML (1983) Calibration and accuracy of polarographic oxygen sensors. In: Polarographic Oxygen Sensors. Aquatic and Physiological Applications. Gnaiger E, Forstner H (eds), Springer, Berlin, Heidelberg, New York: 18-30. |
Mitchell 1975 FEBS Letters | 1975 | Mitchell P (1975) The protonmotive Q cycle: A general formulation. FEBS Lett 59:137-9. |