SUIT-016: Difference between revisions

Revision as of 07:57, 14 March 2017

high-resolution terminology - matching measurements at high-resolution

SUIT-016

Description

Abbreviation: FNS(GM)

Reference: A Gnaiger 2015 Scand J Med Sci Sports

MitoPedia concepts: SUIT protocol, SUIT A

SUIT-category: FNS(GM)

SUIT protocol pattern: diametral

References

SUIT_1OctM;2D;3G;4S;5Rot;6Omy;7U;7c-8Ama

1OctM;2D;3G;4S;5Rot;6Omy;7U;7c-8Ama

SUIT states: 1-2OctM(LP) 3GMOct 4GMSOct 5-7S(PLEc) 8ROX

Step	Respiratory state	Pathway control	Pathway to Q	Comment
1OctM	OctM(L)	F	CETF
2D	OctM(P)	F	CETF	OXPHOS coupling efficiency in state F.
3G	GMOct(P)	FN	FAO&CI	F/N ratio or (N-F)/N flux control factor of OXPHOS capacity.
4S	GMSOct(P)	FNS	FAO&CI&II	Additive effect of the NS pathway combination, compared to the sum of N+S pathway fluxes measured separately, in the OXPHOS state and the presence of F.
5Rot	S(P)	S	CII	The P/E ratio is not obtained in the FNS state, with preference given to the next steps for OXPHOS coupling efficiency. A succinate concentration of >10 mM may be required for saturating S_P capacity.
6Omy	S(L)	S	CII	OXPHOS coupling efficiency in state S, comparable to state F.
7U	S(E)	S	CII	The complete ETS capacity in state S may not be obtained after oligomycin. If apparent P/E>1.0, this is corrected to 1.0.
7c	S(E)	S	CII	If cytochrome c control factors = 0.0, the cytochrome c test conducted at this very late ETS state provides an additional indication of stability of the mt-preparation during the experimental assay. Application of the cytochrome c test earlier in the protocol (SUIT_NS(GM)01: 1GM;2D;2c;3S; ..) is preferable, if cytochrome c control factors > 0.0 may be observed occasionally or regulary. If such cytochrome c effects are not exclusion criteria, then OXPHOS states with all substrate combinations can be compared in the presence of cytochrome c.
8Ama		ROX	ROX	ROX may be lower in substrate states earlier in the SUIT protocol. Therefore, this ROX measurement is frequently taken as a methodological control rather than as the basis of ROX correction of mitochondrial respiration (mt).

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 {{MitoPedia
 |abbr=FNS(GM)
-|description=[[File:1OctM,2D,3G,4S,5Rot,6Omy,7U-.jpg|300px]]
+|description=[[File:1OctM;2D;3G;4S;5Rot;6Omy;7U-.jpg|300px]]
 |info='''A''' [[Gnaiger 2015 Scand J Med Sci Sports]]
 }}
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 __TOC__
 == References ==
-{{#ask:[[Category:Publications]] [[Additional label::SUIT_FNS(GM)01]]
+{{#ask:[[Category:Publications]] [[Additional label::SUIT_1OctM;2D;3G;4S;5Rot;6Omy;7U-]]
 |?Was published in year=Year
 |?Has title=Reference
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-== File:1OctM,2D,3G,4S,5Rot,6Omy,7U,7c-.jpg ==
+== SUIT_1OctM;2D;3G;4S;5Rot;6Omy;7U;7c-8Ama ==
-[[File:SUIT_FNS(GM)01_U(c).jpg|300px]] FNS(GM)01_1OctM,2D,3G,4S,5Rot,6Omy,7U(c)-
+[[File:1OctM;2D;3G;4S;5Rot;6Omy;7U;7c-8Ama.jpg|300px]] 1OctM;2D;3G;4S;5Rot;6Omy;7U;7c-8Ama
-::: '''SUIT states:''' 1-2[[OctM]](LP) 3[[GMOct]] 4[[GMSOct]] 5-8[[S]](PLEc) 9[[ROX]]
+::: '''SUIT states:''' 1-2[[OctM]](LP) 3[[GMOct]] 4[[GMSOct]] 5-7[[S]](PLEc) 8[[ROX]]
 {| class="wikitable" border="1"
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 | [[S]]
 | CII
-| If [[cytochrome c control factor]]s = 0.0, the cytochrome ''c'' test conducted at this very late ETS state provides an additional indication of stability of the mt-preparation during the experimental assay. Application of the cytochrome ''c'' test earlier in the protocol ([[SUIT_NS(GM)01]]: 1GM 2D 3c 4S ..) is preferable, if  [[cytochrome c control factor]]s > 0.0 may be observed occasionally or regulary. If such cytochrome ''c'' effects are not exclusion criteria, then OXPHOS states with all substrate combinations can be  compared in the presence of cytochrome ''c''.
+| If [[cytochrome c control factor]]s = 0.0, the cytochrome ''c'' test conducted at this very late ETS state provides an additional indication of stability of the mt-preparation during the experimental assay. Application of the cytochrome ''c'' test earlier in the protocol ([[SUIT_NS(GM)01]]: 1GM;2D;2c;3S; ..) is preferable, if  [[cytochrome c control factor]]s > 0.0 may be observed occasionally or regulary. If such cytochrome ''c'' effects are not exclusion criteria, then OXPHOS states with all substrate combinations can be  compared in the presence of cytochrome ''c''.
 |-