Baglivo 2024 BEC

From Bioblast


Bioenergetics Communications        
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Gnaiger 2020 BEC MitoPathways
       
Gnaiger E et al โ€• MitoEAGLE Task Group (2020) Mitochondrial physiology. Bioenerg Commun 2020.1.
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Publications in the MiPMap
Baglivo E, Cardoso LHD, Cecatto C, Gnaiger E (2024) Stability of mitochondrial respiration medium used in high-resolution respirometry with living and permeabilized cells. Bioenerg Commun 2024.8. https://doi.org/10.26124/bec.2024-0008

ยป Bioenerg Commun 2024.08. Open Access pdf
published online 2024-12-06

Baglivo Eleonora, Cardoso Luiza HD, Cecatto Cristiane, Gnaiger Erich (2024) Bioenerg Commun

Abstract: BEC.png https://doi.org/10.26124/bec.2024-0008

Quality control (QC) in mitochondrial respiration is essential to ensure accuracy and reproducibility at four levels: (1) sample preparation, (2) instrumental and technical performance, (3) data analysis, and (4) chemicals and respiration medium. In the present study, we focus on the quality of mitochondrial respiration medium MiR05, which plays a crucial role in supporting mitochondrial function.

We prepared MiR05 from 6 lots of MiR05-Kit with storage times of 1 to 51 months at room temperature. Two substrate-uncoupler-inhibitor titration (SUIT) reference protocols were used with cryopreserved HEK 293T cells in the Oroboros Bioenergetics Platform. These protocols interrogate 20 different respiratory states, of which four are comparable with the following rates: ROUTINE respiration of living cells; residual endogenous respiration after permeabilization by digitonin; electron transfer capacity with succinate, rotenone and glycerophosphate after uncoupler titration; and CIV activity stimulated by ascorbate and TMPD corrected for chemical O2 background.

Respiration in all 20 respiratory states was reproducible between the lots of MiR05-Kit and independent of storage time up to 51 months. Chemical O2 background โ€“ caused by autoxidation of cytochrome c, ascorbate and TMPD โ€“ was a linear function of O2 concentration down to 50 ยตM and was comparable for each lot of MiR05-Kit and independent of storage time.

Our 4-year study demonstrates a constant quality of MiR05-Kit up to several years of storage. Stability of MiR05-Kit and consistency between different lots represent essential elements to obtain reproducible results with high-resolution respirometry in research and clinical investigations.

โ€ข Bioblast editor: Tindle-Solomon L โ€ข O2k-Network Lab: AT Innsbruck Oroboros

ORCID: ORCID.png Baglivo Eleonora, ORCID.png Cardoso Luiza HD, ORCID.png Cecatto Cristiane, ORCID.png Gnaiger Erich

Data availability

Original files are available Open Access at Zenodo repository: https://zenodo.org/records/13790397

References

LinkReferenceYearView
Doerrier C, Gama-Perez P, Pesta D, Distefano G, Soendergaard SD, Maise Chroeis K, Gonzalez-Franquesa A, Goodpaster BH, Prats C, Sales-Pardo M, Guimera R, Coen PM, Gnaiger E, Larsen S, Garcia-Roves PM (2024) Harmonization of experimental procedures to assess mitochondrial respiration in human permeabilized skeletal muscle fibers. Free Radic Biol Med 223:384-97. https://doi.org/10.1016/j.freeradbiomed.2024.07.0392024PMID: 39097206 Open Access
Doerrier C, Garcia-Souza LF, Krumschnabel G, Wohlfarter Y, Mรฉszรกros AT, Gnaiger E (2018) High-Resolution FluoRespirometry and OXPHOS protocols for human cells, permeabilized fibers from small biopsies of muscle, and isolated mitochondria. Methods Mol Biol 1782:31-70. https://doi.org/10.1007/978-1-4939-7831-1_32018PMID: 29850993 ยปO2k-brief
Oroboros Procedures
Gnaiger E (2008) Polarographic oxygen sensors, the oxygraph and high-resolution respirometry to assess mitochondrial function. In: Mitochondrial dysfunction in drug-induced toxicity (Dykens JA, Will Y, eds) John Wiley & Sons, Inc, Hoboken, NJ:327-52.2008Bioblast pdf
Oroboros Procedures
Gnaiger E (2021) Bioenergetic cluster analysis โ€“ mitochondrial respiratory control in human fibroblasts. MitoFit Preprints 2021.08. https://doi.org/10.26124/mitofit:2021-00082021MitoFit Preprints 2021.08.
MitoFit pdf
Bioenergetic cluster analysis โ€“ mitochondrial respiratory control in human fibroblasts
Gnaiger E, Kuznetsov AV, Schneeberger S, Seiler R, Brandacher G, Steurer W, Margreiter R (2000) Mitochondria in the cold. In: Life in the Cold (Heldmaier G, Klingenspor M, eds) Springer, Berlin, Heidelberg:431-42. https://doi.org/10.1007/978-3-662-04162-8_452000Bioblast pdf - Springer link
Oroboros Procedures
Komlodi T, Sobotka O, Krumschnabel G, Bezuidenhout N, Hiller E, Doerrier C, Gnaiger E (2018) Comparison of mitochondrial incubation media for measurement of respiration and hydrogen peroxide production. Methods Mol Biol 1782:137-55. https://doi.org/10.1007/978-1-4939-7831-1_82018PMID:29850998
Komlรณdi T, Sobotka O, Gnaiger E (2021) Facts and artefacts on the oxygen dependence of hydrogen peroxide production using Amplex UltraRed. Bioenerg Commun 2021.4. https://doi.org/10.26124/bec:2021-00042021Bioenerg Commun 2021.4. Open Access pdf published online 2021-12-21

Krumschnabel G, Fontana-Ayoub M, Sumbalova Z, Heidler J, Gauper K, Fasching M, Gnaiger E (2015) Simultaneous high-resolution measurement of mitochondrial respiration and hydrogen peroxide production. Methods Mol Biol 1264:245-61. https://doi.org/10.1007/978-1-4939-2257-4_222015PMID: 25631019
Leo E, Rychtarova L, Garcia-Souza LF, ร…sander Frostner E, Elmรฉr E, Gnaiger E (2024) High-resolution respirometry in a small-volume chamber. MitoFit Preprints 2024.4.v2. https://doi.org/10.26124/mitofit:2024-0004.v2 - Accepted on 2024-10-27 as Manuscript JoVE67442R2 for publication in JoVE2024MitoFit Preprints 2024.4.v2.
MitoFit pdf
High-resolution respirometry in a small-volume chamber.
Manko BO, Klevets MY, Manko VV (2013) An implication of novel methodology to study pancreatic acinar mitochondria under in situ conditions. Cell Biochem Funct 31:115-21.2013PMID: 22886484
Reynafarje B, Costa LE, Lehninger AL (1985) O2 solubility in aqueous media determined by a kinetic method. Anal Biochem 145:406-18. https://doi.org/10.1016/0003-2697(85)90381-11985PMID: 4014672
Timรณn-Gรณmez A, Doerrier C, Sumbalovรก Z, Garcia-Souza LF, Baglivo E, Cardoso LHD, Gnaiger E (2024) Analysis of mitochondrial respiratory pathway and coupling control by substrate-uncoupler-inhibitor titration reference protocols. MitoFit Preprints 2024.8. https://doi.org/10.26124/mitofit:2024-00082024MitoFit Preprints 2024.8.
MitoFit pdf
Analysis of mitochondrial respiratory pathway and coupling control by substrate-uncoupler-inhibitor titration reference protocols.
Wollenman LC, Vander Ploeg MR, Miller ML, Zhang Y, Bazil JN (2017) The effect of respiration buffer composition on mitochondrial metabolism and function. PLOS ONE 12:e0187523. https://doi.org/10.1371/journal.pone.01875232017PMID: 29091971 Open Access ยปO2k-brief
Oroboros Manual
Oxygraph assay of cytochrome c oxidase activity: chemical background correction. Mitochondr Physiol Network 06.06(07)
2015-04-27Bioblast pdf ยป Versions
Oroboros_Procedures
Development of a reference sample for high-resolution respirometry.
2024-12-06Bioblast pdf ยปVersions

MitoFit Preprint

ยป Baglivo 2024 MitoFit

Additional links

ยป Instruction for preparation of mitochondrial respiration media with MiR05-Kit
ยป MiR05-Kit


Labels: MiParea: Respiration, Instruments;methods 


Organism: Human  Tissue;cell: HEK  Preparation: Permeabilized cells, Intact cells 



HRR: Oxygraph-2k, O2k-Protocol 

MiR05, O2k-chemicals and media 

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