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User:Beno Marija/My sandbox MiPNet publication list

From Bioblast
 YearReference
MiPNet14.06 Instrumental O2 background2023-10-19
O2k-Manual
O2k Quality Control 2: Instrumental oxygen background correction and accuracy of oxygen flux.
MiPNet28.07 NextGen-O2k Series XB manual2023-10-19
O2k-Manual
NextGen-O2k Series XB manual
MiPNet28.08 Oroboros O2k Series J manual2023-10-19
O2k-Manual
Oroboros O2k Series J manual
MiPNet28.10 SmartPOS-service2023-09-29
O2k-Manual
SmartPOS: Service
MiPNet19.14 SOP Hamilton microsyringes2023-09-28
O2k-Manual
SOP for manual O2k-titrations with Hamilton microsyringes.
MiPNet28.09 O2k-Fluo Smart-Module manual2023-09-25
O2k-Manual
O2k-Fluo Smart-Module manual
MiPNet19.03 O2k-cleaning and ISS2023-03-14
O2k-Manual
O2k-Chamber cleaning SOP and Integrated Suction System (ISS).
MiPNet22.11 O2k-FluoRespirometer manual2023-03-14
O2k-Manual
O2k-FluoRespirometer manual.
MiPNet06.03 POS-calibration-SOP2023-02-06
O2k-Manual
O2k Quality Control 1: Polarographic oxygen sensors and accuracy of calibration.
MiPNet26.14 Oxia2022-10-31
O2k-Manual
Oxia - HyperOxia to HypOxia.
MiPNet27.07 Sample Holder2022-08-09
O2k-Manual
Sample Holder.
MiPNet26.13 NextGen-O2k manual2022-07-25
O2k-Manual
NextGen-O2k manual
MiPNet26.12 NextGen-O2k: NADH-Module2022-05-17
O2k-Manual
NextGen-O2k: NADH-Module manual
MiPNet08.16 pH calibration2022-03-01
O2k-Manual
Laboratory protocol: pH measurement and temperature dependence of pH.
MiPNet26.11 NextGen-O2k: PB-Module2021-10-29
O2k-Manual
NextGen-O2k: PB-Module manual
MiPNet24.12 NextGen-O2k: Q-Module2021-10-29
O2k-Manual
NextGen-O2k: Q-Module manual
MiPNet24.16 DatLab8.0: CV-Module2021-10-28
O2k-Manual
DatLab8.0: Cyclic voltammetry manual
MiPNet15.03 O2k-MultiSensor-ISE2021-08-02
O2k-Manual
O2k-MultiSensor system with ion selective electrodes (ISE).
MiPNet12.10 TIP2k-manual2021-07-08
O2k-Manual
Titration-Injection microPump TIP2k manual.
MiPNet19.18B POS-service2021-06-23
O2k-Manual
Service of the polarographic oxygen sensor OroboPOS.
MiPNet17.05 O2k-Fluo LED2-Module2021-06-22
O2k-Manual
O2k-Fluo LED2-Module.
MiPNet26.06 DatLab 7: Guide2021-06-02
O2k-Manual
DatLab-guide through the menus.
MiPNet20.04 O2k-checklist2021-03-12
O2k-Manual
O2k-checklist: get started with an O2k-experiment.
MiPNet24.14 O2k-sV-Module manual2020-03-17
O2k-Manual
O2k-sV-Module manual.
MiPNet23.15 O2k-pH ISE-Module2018-09-08
O2k-Manual
Measurement of proton flux with the O2k-pH ISE-Module.
MiPNet07.08 User information2017-11-03
O2k-Manual
O2k-Manual: user information. PLEASE STUDY THIS MANUAL.
MiPNet19.18C DatLab 6: Guide2016-08-24
O2k-Manual
DatLab-guide through the menus.
MiPNet19.18A O2k-Series G: Start2016-08-08
O2k-Manual
Oxygraph-2k: start high-resolution respirometry.
MiPNet19.18 O2k-Series G Core manual2016-08-08
O2k-Manual
O2k-Core manual contents.
MiPNet19.18E O2 flux analysis - DatLab 62016-08-08
O2k-Manual
Oxygen flux analysis: DatLab real-time.
MiPNet15.05 NO-manual2016-04-21
O2k-Manual
O2k-MultiSensor system with amperometric sensors: NO, H2S, H2O2.
MiPNet17.02 PBI-Shredder manual2015-06-19
O2k-Manual
PBI-Shredder HRR-Set: preparation of tissue homogenates for diagnosis of mitochondrial respiratory function.
MiPNet06.06 Chemical O2 background2015-04-27
O2k-Manual
Oxygraph assay of cytochrome c oxidase activity: chemical background correction.
MiPNet19.20 Cytochrome c control efficiency2014-04-21Cytochrome c control efficiency: a test for outer mt-membrane integrity.
MiPNet19.01 O2k-Core Manual Series F DatLab 52014-03
O2k-Manual
O2k-Core Manual - up to O2k-Series F and DatLab 5.
MiPNet02.05 DatLab2 O2Kinetics1997-01
O2k-Manual
DatLab 2. Analysis of oxygen kinetics.
MiPNet02.04 DatLab2 TimeConstant1997
O2k-Manual
DatLab 2. High time resolution.
MiPNet02.07 Datlab2 Manual1997
O2k-Manual
DatLab 2 Analysis. High resolution of data in the lab.
 YearReference
MiPNet11.05 imt-pti-pce2022-04-10
O2k-Protocols
Isolated mitochondria or permeabilized tissues and cells.
MiPNet22.10 MiR05-Kit2022-03-03
O2k-Manual
Mitochondrial Respiration Medium - MiR05-Kit.
Baglivo 2022 MitoFit-QC2022Baglivo E, Cardoso LHD, Cecatto C, Gnaiger E (2022) Statistical analysis of instrumental reproducibility as internal quality control in high-resolution respirometry. https://doi.org/10.26124/mitofit:2022-0018.v2 — 2022-08-04 published in Bioenerg Commun 2022.8.
Baglivo 2022 BEC2022Baglivo E, Cardoso LHD, Cecatto C, Gnaiger E (2022) Statistical analysis of instrumental reproducibility as internal quality control in high-resolution respirometry. Bioenerg Commun 2022.8. https://doi.org/10.26124/bec:2022-0008
MiPNet24.10 H2O2 flux analysis2021-10-22
O2k-Protocols
Hydrogen peroxide flux analysis using Amplex UltraRed assay in MiR05-Kit with DatLab 7.4
MiPNet26.10 MgG data analysis2021-09-16
O2k-Protocols
Measurement of mitochondrial ATP production using Magnesium Green: DL-Protocols and data analysis with DatLab 7.4
MiPNet24.09 Data analysis of mt-membrane potential2021-09-16
O2k-Protocols
Data analysis of mt-membrane potential.
MiPNet20.06 IsolationMouseHeart-mt2021-08-09
O2k-Protocols
Laboratory protocol: isolation of mouse heart mitochondria.
MiPNet17.05 O2k-Fluo LED2-Module2021-06-22
O2k-Manual
O2k-Fluo LED2-Module.
Went 2021 MitoFit PB2021Went N, Di Marcello M, Gnaiger E (2021) Oxygen dependence of photosynthesis and light-enhanced dark respiration studied by High-Resolution PhotoRespirometry. MitoFit Preprints 2021.05. https://doi.org/10.26124/mitofit:2021-0005
Komlodi 2021 BEC Q2021KomlĂłdi T, Cardoso LHD, Doerrier C, Moore AL, Rich PR, Gnaiger E (2021) Coupling and pathway control of coenzyme Q redox state and respiration in isolated mitochondria. Bioenerg Commun 2021.3. https://doi.org/10.26124/bec:2021-0003
Komlodi 2021 BEC AmR-O22021KomlĂłdi T, Sobotka O, Gnaiger E (2021) Facts and artefacts on the oxygen dependence of hydrogen peroxide production using Amplex UltraRed. Bioenerg Commun 2021.4. https://doi.org/10.26124/bec:2021-0004
Cardoso 2021 BEC MgG2021Cardoso LHD, Doerrier C, Gnaiger E (2021) Magnesium Green for fluorometric measurement of ATP production does not interfere with mitochondrial respiration. Bioenerg Commun 2021.1. https://doi.org/10.26124/bec:2021-0001
MiPNet21.17 BloodCellsIsolation2020-10-22
O2k-Protocols
O2k-Protocols: Isolation of blood cells for HRR.
MiPNet09.12 O2k-Titrations2020-08-17
O2k-Protocols
O2k manual titrations: SUIT protocols with mitochondrial preparations.
MiPNet24.08 Safranin Analysis Template2020-05-13
O2k-Protocols
Excel template for safranin data analysis.
MiPNet17.04 CitrateSynthase2020-04-18
O2k-Protocols
Laboratory protocol: Citrate synthase a mitochondrial marker enzyme.
MiPNet24.06 Oxygen flux analysis - DatLab 7.42020-04-16
O2k-Protocols
Oxygen flux analysis with DatLab 7.4.
MiPNet25.14 TPP Analysis Template2020-##-##
O2k-Protocols
Excel template for TPP data analysis.
BEC 2020.1 doi10.26124bec2020-0001.v12020Gnaiger E et al ― MitoEAGLE Task Group (2020) Mitochondrial physiology. Bioenerg Commun 2020.1. https://doi.org/10.26124/bec:2020-0001.v1
Gnaiger 2020 BEC MitoPathways2020Gnaiger E (2020) Mitochondrial pathways and respiratory control. An introduction to OXPHOS analysis. 5th ed. Bioenerg Commun 2020.2. https://doi.org/10.26124/bec:2020-0002
MiPNet21.16 DatLab 7 Innovations2019-09-23
About Oroboros
DatLab 7: innovations.
MiPNet23.12 DL-Protocols help2019-09-13
O2k-Protocols
DatLab Protocols: Help DatLab 7.
MiPNet22.16 DatLab 7 Innovations: DL-Protocols2019-09-13
O2k-Protocols
DatLab 7.4 Innovations: DL-Protocols
MiPNet24.11 mtMP calculation2019-08-05
O2k-Protocols
Mitochondrial membrane potential calculation
MiPNet18.05 Amplex-Mouse-heart2019-06-24
O2k-Protocols
O2k-Fluorometry: HRR and H2O2 production in mouse cardiac tissue homogenate.
MiPNet20.14 AmplexRed H2O2-production2019-06-24
O2k-Protocols
O2k-FluoRespirometry: HRR and simultaneous determination of H2O2 production with Amplex UltraRed.
MiPNet20.13 Safranin mt-membranepotential2019-06-24
O2k-Protocols
O2k-FluoRespirometry: HRR and simultaneous determination of mt-membrane potential with safranin or TMRM.
MiPNet18.06 Amplex-Yeast2019-06-24
O2k-Protocols
O2k-FluoRespirometry: Amplex UltraRed using freeze-dried baker’s yeast. » Update: KomlĂłdi T, Sobotka O, Gnaiger E (2021) Facts and artefacts on the oxygen dependence of hydrogen peroxide production using Amplex UltraRed. MitoFit Preprints 2021.10. doi:10.26124/mitofit:2021-0010
Long 2019 Methods Mol Biol2019Long Q, Huang L, Huang K, Yang Q (2019) Assessing mitochondrial bioenergetics in isolated mitochondria from mouse heart tissues using Oroboros Oxygraph-2k. Methods Mol Biol 1966:237-46.
Naszai 2019 Sci Rep2019NĂĄszai A, Terhes E, Kaszaki J, Boros M, JuhĂĄsz L (2019) Ca(2+)N it be measured? Detection of extramitochondrial calcium movement with high-resolution FluoRespirometry. Sci Rep 9:19229.
MiPNet12.01 Suppl T-issue2018-11-18
O2k-Protocols contents
MitoPathways at the Q-junction: mouse skeletal muscle fibers.
Doerrier 2018 Methods Mol Biol2018Doerrier C, Garcia-Souza LF, Krumschnabel G, Wohlfarter Y, MĂ©szĂĄros AT, Gnaiger E (2018) High-Resolution FluoRespirometry and OXPHOS protocols for human cells, permeabilized fibers from small biopsies of muscle, and isolated mitochondria. Methods Mol Biol 1782:31-70. https://doi.org/10.1007/978-1-4939-7831-1_3
Komlodi 2018 Methods Mol Biol2018Komlodi T, Sobotka O, Krumschnabel G, Bezuidenhout N, Hiller E, Doerrier C, Gnaiger E (2018) Comparison of mitochondrial incubation media for measurement of respiration and hydrogen peroxide production. Methods Mol Biol 1782:137-55.
Lemieux 2017 Sci Rep2017Lemieux H, Blier PU, Gnaiger E (2017) Remodeling pathway control of mitochondrial respiratory capacity by temperature in mouse heart: electron flow through the Q-junction in permeabilized fibers. Sci Rep 7:2840. doi:10.1038/s41598-017-02789-8
MiPNet20.08 IsolationRatLiver-mt2016-11-18
O2k-Protocols
Laboratory Protocol: isolation of rat liver mitochondria.
MiPNet21.14 Reference sample HRR2016-10-19
O2k-Protocols
Development of a reference sample for HRR.
MiPNet21.13 Comparison mt-preparations2016-10-18
O2k-Protocols
O2k-Protocols: Mitochondrial preparations for HRR.
MiPNet21.12 Comparison mt respiration media2016-10-18
O2k-Protocols
O2k-MultiSensor: Mitochondrial respiration media for HRR and simultaneous O2k-Fluorometry.
MiPNet03.02 Chemicals-Media2016-08-30Selected media and chemicals for respirometry with mitochondrial preparations.
O2k-Protocols
MiPNet14.13 Medium-MiR062016-08-30
O2k-Protocols
Mitochondrial respiration medium - MiR06.
MiPNet08.09 CellRespiration2016-08-11
O2k-Procedures contents
High-resolution respirometry and coupling-control protocol with living cells: ROUTINE, LEAK, ET-pathway, ROX.
MiPNet19.18E O2 flux analysis - DatLab 62016-08-08
O2k-Manual
Oxygen flux analysis: DatLab real-time.
MiPNet10.04 CellRespiration2016-08-08
O2k-Protocols
An experiment with high-resolution respirometry: coupling control in cell respiration.
MiPNet21.07 MitoFit DatLab PT2016-07-20
O2k-Protocols
MitoFit DatLab proficiency test.
MiPNet20.07 IsolationRatBrain-mt2016-06-18Laboratory Protocol: isolation of rat brain mitochondria.
O2k-Protocols
MiPNet14.05 TPP-mtMembranePotential2016-04-01
O2k-Protocols contents
TPP+ and mt-membrane potential.
MiPNet20.15 IsolationRatHeart-mt2016-03-25
O2k-Protocols
Laboratory protocol: isolation of rat heart mitochondria.
MiPNet17.15 PBI-Shredder Mouse-heart-brain-liver2015-06-22
O2k-Protocols
Tissue homogenates for diagnosis of mitochondrial respiratory function: Mouse heart, brain and liver.
MiPNet14.14 PermeabilizedFiberPreparation2015-06-22
O2k-Protocols contents
Preparation of permeabilized muscle fibers for diagnosis of mitochondrial respiratory function.
MiPNet17.02 PBI-Shredder manual2015-06-19
O2k-Manual
PBI-Shredder HRR-Set: preparation of tissue homogenates for diagnosis of mitochondrial respiratory function.
MiPNet17.03 Shredder vs Fibers2015-06-18
O2k-Protocols
Mitochondrial respiration in permeabilized fibers versus homogenate from fish liver and heart. An application study with the PBI-Shredder.
MiPNet20.09 IsolationBeefHeart-mt2015-06-15
O2k-Protocols
Laboratory protocol: isolation of beef heart mitochondria.
Makrecka-Kuka 2015 Biomolecules2015Makrecka-Kuka M, Krumschnabel G, Gnaiger E (2015) High-resolution respirometry for simultaneous measurement of oxygen and hydrogen peroxide fluxes in permeabilized cells, tissue homogenate and isolated mitochondria. https://doi.org/10.3390/biom5031319
Gnaiger 2015 Scand J Med Sci Sports2015Gnaiger E, Boushel R, SĂžndergaard H, Munch-Andersen T, Damsgaard R, Hagen C, DĂ­ez-SĂĄnchez C, Ara I, Wright-Paradis C, Schrauwen P, Hesselink M, Calbet JAL, Christiansen M, Helge JW, Saltin B (2015) Mitochondrial coupling and capacity of oxidative phosphorylation in skeletal muscle of Inuit and caucasians in the arctic winter. https://doi.org/10.1111/sms.12612
Krumschnabel 2015 Methods Mol Biol2015Krumschnabel G, Fontana-Ayoub M, Sumbalova Z, Heidler J, Gauper K, Fasching M, Gnaiger E (2015) Simultaneous high-resolution measurement of mitochondrial respiration and hydrogen peroxide production. Methods Mol Biol 1264:245-61.
MiPNet12.11 MitoRespiration2014-02-20
O2k-Protocols
Flux control ratios in isolated mitochondria. OXPHOS capacity and respiratory control.
Krumschnabel 2014 Methods Enzymol2014Krumschnabel G, Eigentler A, Fasching M, Gnaiger E (2014) Use of safranin for the assessment of mitochondrial membrane potential by high-resolution respirometry and fluorometry. https://doi.org/10.1016/B978-0-12-416618-9.00009-1
Van Bergen 2014 Mitochondrion2014Van Bergen NJ, Blake RE, Crowston JG, Trounce IA (2014) Oxidative phosphorylation measurement in cell lines and tissues. Mitochondrion 15:24-33.
Chinopoulos 2014 Methods Enzymol2014Chinopoulos C, Kiss G, Kawamata H, Starkov AA (2014) Measurement of ADP-ATP exchange in relation to mitochondrial transmembrane potential and oxygen consumption. Methods Enzymol 542:333-48. doi:10.1016/B978-0-12-416618-9.00017-0
Elustondo 2014 Biochim Biophys Acta2014Elustondo PA, Negoda A, Kane CL, Kane DA, Pavlov EV (2014) Spermine selectively inhibits high-conductance, but not low-conductance calcium-induced permeability transition pore. Biochim Biophys Acta 1847:231–40.
Pesta 2012 Methods Mol Biol2012Pesta D, Gnaiger E (2012) High-resolution respirometry. OXPHOS protocols for human cells and permeabilized fibers from small biopsies of human muscle. Methods Mol Biol 810:25-58. https://doi.org/10.1007/978-1-61779-382-0_3
MiPNet15.08 TPP electrode2011-12-11
O2k-Protocols
Ion selective electrode for TPP+ and high-resolution respirometry.
MiPNet08.12 IOC222011-12-11
O2k-Protocols
NO effect on mitochondrial oxygen kinetics at low oxygen. O2k workshop Report.
Lemieux 2011 Int J Biochem Cell Biol2011Lemieux H, Semsroth S, Antretter H, Höfer D, Gnaiger E (2011) Mitochondrial respiratory control and early defects of oxidative phosphorylation in the failing human heart. Int J Biochem Cell Biol 43:1729–38. https://doi.org/10.1016/j.biocel.2011.08.008
MiPNet08.15 Complex-I2010-08-23
O2k-Protocols
Laboratory protocol: Complex I (NADH:Ubiquinone Oxidoreductase, EC 1.6.5.3). Mitochondrial membrane enzyme.
MiPNet08.18 LactateDehydrogenase2010-08-06
O2k-Protocols contents
Laboratory protocol: Lactate dehydrogenase. Cytosolic marker enzyme.
MiPNet08.13 mt-Isolation-RLM2010-08-03
O2k-Protocols
Laboratory protocol: Isolation of rat liver mitochondria.
Aguirre 2010 Biochim Biophys Acta2010Aguirre E, RodrĂ­guez-JuĂĄrez F, Bellelli A, Gnaiger E, Cadenas S (2010) Kinetic model of the inhibition of respiration by endogenous nitric oxide in intact cells. Biochim Biophys Acta 1797:557-65. https://doi.org/10.1016/j.bbabio.2010.01.033
Gnaiger 2009 Int J Biochem Cell Biol2009Gnaiger E (2009) Capacity of oxidative phosphorylation in human skeletal muscle. New perspectives of mitochondrial physiology. https://doi.org/10.1016/j.biocel.2009.03.013
Gnaiger 2008 POS2008Gnaiger E (2008) Polarographic oxygen sensors, the oxygraph and high-resolution respirometry to assess mitochondrial function. In: Mitochondrial dysfunction in drug-induced toxicity (Dykens JA, Will Y, eds) John Wiley & Sons, Inc, Hoboken, NJ:327-52.
Gnaiger 2007 MitoPathways2007
O2k-Protocols
Gnaiger E ed (2007) Mitochondrial pathways and respiratory control. 1st ed. Oroboros MiPNet Publications, Innsbruck:96 pp. ISBN 978-3-9502399-0-4. — see 5th edition: Gnaiger 2020 BEC MitoPathways.
Huetter 2004 Biochem J2004HĂŒtter E, Renner K, Pfister G, Stöckl P, Jansen-DĂŒrr P, Gnaiger E (2004) Senescence-associated changes in respiration and oxidative phosphorylation in primary human fibroblasts. https://doi.org/10.1042/BJ20040095
Gnaiger 2000 Life in the Cold2000Gnaiger E, Kuznetsov AV, Schneeberger S, Seiler R, Brandacher G, Steurer W, Margreiter R (2000) Mitochondria in the cold. In: Life in the Cold (Heldmaier G, Klingenspor M, eds) Springer, Berlin, Heidelberg:431-42. https://doi.org/10.1007/978-3-662-04162-8_45
MiPNet04.05 Titration-Injection1999-01
O2k-Protocols contents
From step titration to ramp injection: Uncoupling by FCCP with TIP.
Steinlechner-Maran 1996 Am J Physiol Cell Physiol1996Steinlechner-Maran R, Eberl T, Kunc M, Margreiter R, Gnaiger E (1996) Oxygen dependence of respiration in coupled and uncoupled endothelial cells. Am J Physiol Cell Physiol 271:C2053-61. https://doi.org/10.1152/ajpcell.1996.271.6.C2053