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{{#ask: [[Category:Publications]] [[Instrument and method::Oxygraph-2k]] [[Preparation::Permeabilized cells]]
 |?Was published in year=Year
 |?Has title=Reference
 |?Mammal and model=Organism
 |?Tissue and cell=Tissue;cell
 |format=broadtable
 |limit=50
 |offset=500
 |sort=
 |order=asc
 |mainlabel=
}}

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Query log

{
    "query_string": "[[Category:Publications]] [[Instrument and method::Oxygraph-2k]] [[Preparation::Permeabilized cells]]",
    "query_source": "SMWSQLStore",
    "query_time": "0.0342",
    "from_cache": false
}

Debug output SQLStore

ASK Query

[[Category:Publications]] [[Instrument and method::Oxygraph-2k]] [[Preparation::Permeabilized cells]]

SQL Query

SELECT DISTINCT
t0.smw_id AS id,
  t0.smw_title AS t,
  t0.smw_namespace AS ns,
  t0.smw_iw AS iw,
  t0.smw_subobject AS so,
  t0.smw_sortkey AS sortkey, t0.smw_sort
FROM
`smw_object_ids` AS t0
INNER JOIN
(`smw_fpt_inst` AS t2
INNER JOIN
`t3` AS t3 ON t2.o_id=t3.id
INNER JOIN
`smw_di_blob` AS t4 ON t2.s_id=t4.s_id
INNER JOIN
`smw_di_blob` AS t6 ON t2.s_id=t6.s_id) ON t0.smw_id=t2.s_id
WHERE
(
   ((t4.o_hash='Oxygraph-2k') AND t4.p_id=80876)
   AND (
   (t6.o_hash='Permeabilized cells') AND t6.p_id=80881)
  )
  AND t0.smw_iw!=':smw'
  AND t0.smw_iw!=':smw-delete'
  AND t0.smw_iw!=':smw-redi'
ORDER BY
t0.smw_sort ASC
LIMIT
55
OFFSET
500

SQL Explain

ID	select_type	table	type	possible_keys	key	key_len	ref	rows	filtered	Extra
1	SIMPLE	t6	ref	s_id, p_id, s_id_2, o_hash	p_id	262	const, const	757	100.00	Using index condition; Using temporary; Using filesort

Auxilliary Tables

Temporary table t3
Recursively computed hierarchy for element(s) (80971).
SELECT s_id FROM `smw_fpt_subc` WHERE o_id=80971 LIMIT 1

Query Metrics

Query-Size:5
Query-Depth:1

Errors and Warnings

None

	Year	Reference	Organism	Tissue;cell
Puurand 2017 MiP2017		Cellular phosphotransfer networks as a target of bioenergetic research – methods of oxygraphic study.
Puurand 2018 Int J Mol Sci	2018	Puurand M, Tepp K, Klepinin A, Klepinina L, Shevchuk I, Kaambre T (2018) Intracellular energy-transfer networks and high-resolution respirometry: a convenient approach for studying their function. Int J Mol Sci 19:e2933.
Qaed 2019 Oxid Med Cell Longev	2019	Qaed E, Wang J, Almoiliqy M, Song Y, Liu W, Chu P, Alademi S, Alademi M, Li H, Alshwmi M, Al-Azab M, Ahsan A, Mahdi S, Han G, Niu M, Ali A, Shopit A, Wang H, Li X, Qaid A, Ma X, Li T, Peng J, Ma J, Zhang J, Tang Z (2019) Phosphocreatine improves cardiac dysfunction by normalizing mitochondrial respiratory function through JAK2/STAT3 signaling pathway in vivo and in vitro. Oxid Med Cell Longev 2019:6521218.	Rat	Heart
Qi 2017 Ann Allergy Asthma Immunol	2017	Qi S, Cindy Barnig C, Charles AL, Poirot A, Meyer A, Clere-Jehl R, de Blay F, Geny B (2017) Nasal allergen challenge in allergic rhinitis induces mitochondrial dysfunction of peripheral blood mononuclear cells. Ann Allergy Asthma Immunol 118:367-9.	Human	Blood cells Lymphocyte
Radenkovic 2017 Biochem Pharmacol	2017	Radenkovic F, Holland OJ, Vanderlelie JJ, Perkins AV (2017) Selective inhibition of endogenous antioxidants with Auranofin causes mitochondrial oxidative stress which can be countered by selenium supplementation. Biochem Pharmacol 146:42-52.	Human	Other cell lines
Rajkumar 2018 Metabolism	2018	Rajkumar A, Liaghati A, Chan J, Lamothe G, Dent R, Doucet É, Rabasa-Lhoret R, Prud'homme D, Harper ME, Tesson F (2018) ACSL5 genotype influence on fatty acid metabolism: a cellular, tissue, and whole-body study. Metabolism 83:271-9.	Human Mouse	Skeletal muscle Other cell lines
Ransy 2020 Int J Mol Sci	2020	Ransy C, Vaz C, Lombès A, Bouillaud F (2020) Use of H₂O₂ to cause oxidative stress, the catalase issue. Int J Mol Sci 21:9149. https://doi.org/10.3390/ijms21239149		CHO
Raturi 2016 J Cell Biol	2016	Raturi A, Gutiérrez T, Ortiz-Sandoval C, Ruangkittisakul A, Herrera-Cruz MS, Rockley JP, Gesson K, Ourdev D, Lou PH, Lucchinetti E, Tahbaz N, Zaugg M, Baksh S, Ballanyi K, Simmen T (2016) TMX1 determines cancer cell metabolism as a thiol-based modulator of ER-mitochondria Ca²⁺ flux. J Cell Biol 214:433-44.	Mouse Human	HeLa Other cell lines
Rawat 2019 J Mol Biol	2019	Rawat S, Anusha V, Jha M, Sreedurgalakshmi K, Raychaudhuri S (2019) Aggregation of respiratory complex subunits marks the onset of proteotoxicity in proteasome inhibited cells. J Mol Biol 431:996-1015.	Mouse	Nervous system Other cell lines
Reda 2019 Sci Rep	2019	Reda A, Refaat A, Abd-Rabou AA, Mahmoud AM, Adel M, Sabet S, Ali SS (2019) Role of mitochondria in rescuing glycolytically inhibited subpopulation of triple negative but not hormone-responsive breast cancer cells. Sci Rep 9:13748.	Human	Endothelial;epithelial;mesothelial cell
Regueira 2009 Liver Int	2009	Regueira T, Lepper PM, Brandt S, Ochs M, Vuda M, Takala J, Jakob SM, Djafarzadeh S (2009) Hypoxia inducible factor-1alpha induction by tumour necrosis factor-alpha, but not by toll-like receptor agonists, modulates cellular respiration in cultured human hepatocytes. Liver Int 10:1582-92.	Human	Liver
Reich 2016 Thesis	2016	Reich V (2016) Pathophysiologie und Verfahrensentwicklung: Mechanismen der Metabolisierung von Schwefelwasserstoff im mitochondrialen Atmungskreislauf von Lungenalveolarmakrophagen. Dissertation p91.	Mouse	Macrophage-derived
Reis 2016 Aging (Albany NY)	2016	Reis FC, Branquinho JL, Brandão BB, Guerra BA, Silva ID, Frontini A, Thomou T, Sartini L, Cinti S, Kahn CR, Festuccia WT, Kowaltowski AJ, Mori MA (2016) Fat-specific Dicer deficiency accelerates aging and mitigates several effects of dietary restriction in mice. Aging (Albany NY) 8:1201-22.	Mouse	Fat
Remels 2010 Mol Cell Endocrinol	2010	Remels AH, Langen RC, Schrauwen P, Schaart G, Schols AM, Gosker HR (2010) Regulation of mitochondrial biogenesis during myogenesis. Mol Cell Endocrinol 315:113-20.	Mouse Rat	Skeletal muscle Other cell lines
Renner 2003 Biochim Biophys Acta	2003	Renner K, Amberger A, Konwalinka G, Gnaiger E (2003) Changes of mitochondrial respiration, mitochondrial content and cell size after induction of apoptosis in leukemia cells. Biochim Biophys Acta 1642:115-23.	Human	Blood cells
Repp 2019 Thesis	2019	Repp BM (2019) Identification and verification of novel disease-causing genes and therapy options for patients with mitochondrial disorders – Focus on ACAD9. PhD Thesis 178.	Human	HEK
Reynolds 2016 Am J Physiol Endocrinol Metab	2016	Reynolds MS, Hancock CR, Ray JD, Kener KB, Draney C, Garland K, Hardman J, Bikman BT, Tessem JS (2016) β-cell deletion of Nr4a1 and Nr4a3 nuclear receptors impedes mitochondrial respiration and insulin secretion. Am J Physiol Endocrinol Metab 311:E186-201.	Rat	Islet cell;pancreas;thymus
Rhein 2009 Cell Mol Neurobiol	2009	Rhein V, Baysang G, Rao S, Meier F, Bonert A, Müller-Spahn F, Eckert A (2009) Amyloid-beta leads to impaired cellular respiration, energy production and mitochondrial electron chain complex activities in human neuroblastoma cells. Cell Mol Neurobiol 29:1063-71.	Human	Nervous system Neuroblastoma
Rhein 2010 PloS One	2010	Rhein V, Giese M, Baysang G, Meier F, Rao S, Schulz KL, Hamburger M, Eckert A (2010) Ginkgo biloba extract ameliorates oxidative phosphorylation performance and rescues abeta-induced failure. PloS One 5:e12359.		Neuroblastoma
Richter 2019 Life Sci Alliance	2019	Richter U, Ng KY, Suomi F, Marttinen P, Turunen T, Jackson C, Suomalainen A, Vihinen H, Jokitalo E, Nyman TA, Isokallio MA, Stewart JB, Mancini C, Brusco A, Seneca S, Lombès A, Taylor RW, Battersby BJ (2019) Mitochondrial stress response triggered by defects in protein synthesis quality control. Life Sci Alliance 2:e201800219.	Human	Fibroblast
Riguet 2021 Nat Commun	2021	Riguet N, Mahul-Mellier AL, Maharjan N, Burtscher J, Croisier M, Knott G, Hastings J, Patin A, Reiterer V, Farhan H, Nasarov S, Lashuel HA (2021) Nuclear and cytoplasmic huntingtin inclusions exhibit distinct biochemical composition, interactome and ultrastructural properties. Nat Commun 12:6579.	Human	HEK
Rios-Morales 2022 Biochim Biophys Acta Mol Basis Dis	2022	Rios-Morales M, Vieira-Lara MA, Homan E, Langelaar-Makkinje M, Gerding A, Li Z, Huijkman N, Rensen PCN, Wolters JC, Reijngoud DJ, Bakker BM (2022) Butyrate oxidation attenuates the butyrate-induced improvement of insulin sensitivity in myotubes. https://doi.org/10.1016/j.bbadis.2022.166476	Mouse	Skeletal muscle
Risiglione 2020 Int J Mol Sci	2020	Risiglione P, Leggio L, Cubisino SAM, Reina S, Paternò G, Marchetti B, Magrì A, Iraci N, Messina A (2020) High-resolution respirometry reveals MPP⁺ mitochondrial toxicity mechanism in a cellular model of parkinson's disease. Int J Mol Sci 21:E7809. https://doi.org/10.3390/ijms21217809	Human	Neuroblastoma
Risiglione 2022 Life (Basel)	2022	Risiglione P, Cubisino SAM, Lipari CLR, De Pinto V, Messina A, Magrì A (2022) α-Synuclein A53T promotes mitochondrial proton gradient dissipation and depletion of the organelle respiratory reserve in a neuroblastoma cell line. https://doi.org/10.3390/life12060894	Human	Neuroblastoma
Robertson 2023 J Cell Sci	2023	Robertson GL, Riffle S, Patel M, Bodnya C, Marshall A, Beasley HK, Garza-Lopez E, Shao J, Vue Z, Hinton A, Stoll MS, de Wet S, Theart RP, Chakrabarty RP, Loos B, Chandel NS, Mears JA, Gama V (2023) DRP1 mutations associated with EMPF1 encephalopathy alter mitochondrial membrane potential and metabolic programs. https://doi.org/10.1242/jcs.260370	Human	Fibroblast
Robinson 2019 Am J Physiol Cell Physiol	2019	Robinson MM, Sather BK, Burney ER, Ehrlicher SE, Stierwalt HD, Franco MC, Newsom SA (2019) Robust intrinsic differences in mitochondrial respiration and H₂O₂ emission between L6 and C2C12 cells. Am J Physiol Cell Physiol 317:C339-C347.	Mouse Rat	Skeletal muscle
Rodrigues 2014 Abstract MiP2014		Bioenergetics’ traits of tongue cancer metastatic cells.	Mouse	Lymphocyte
Rodrigues 2016 Biochem J	2015	Rodrigues MF, Obre E, Melo FH, Santos-Jr GC, Galina A, Jasiulionis MG, Rossignol R, Rumjanek FD, Amoedo ND (2016) Enhanced OXPHOS, glutaminolysis and beta-oxidation constitute the metastatic phenotype of melanoma cells. https://doi.org/10.1042/BJ20150645	Mouse	Endothelial;epithelial;mesothelial cell Other cell lines
Rodrigues-Ferreira 2012 J Bioenerg Biomembr	2012	Rodrigues-Ferreira C, Pereira da Silva AP, Galina A (2012) Effect of the antitumoral alkylating agent 3-bromopyruvate on mitochondrial respiration: role of mitochondrially bound hexokinase. J Bioenerg Biomembr 44:39-49.	Human Mouse	Nervous system Liver Other cell lines
Rodrigues-Silva 2017 J Neurooncol	2017	Rodrigues-Silva E, Siqueira-Santos ES, Ruas JS, Ignarro RS, Figueira TR, Rogério F, Castilho RF (2017) Evaluation of mitochondrial respiratory function in highly glycolytic glioma cells reveals low ADP phosphorylation in relation to oxidative capacity. 10.1007/s11060-017-2482-0	Rat	Nervous system
Rodriguez 2017 Thesis	2017	Rodriguez NW (2017) Acylation of superoxide dismutase 1 (SOD1) at K122 alters SOD1 localization and SOD1-mediated inhibition of mitochondrial respiration. Master's Thesis p66.	Human	Kidney
Roginski 2020 Biochim Biophys Acta Mol Basis Dis	2020	Roginski AC, Wajner A, Cecatto C, Wajner SM, Castilho RF, Wajner M, Amaral AU (2020) Disturbance of bioenergetics and calcium homeostasis provoked by metabolites accumulating in propionic acidemia in heart mitochondria of developing rats. Biochim Biophys Acta Mol Basis Dis 1866:165682.	Rat	Heart Other cell lines
Rohlena 2015 Abstract MiP2015		Ubiquinone-binding site mutagenesis reveals the role of mitochondrial complex II in cell death initiation.	Human	Other cell lines
Rohlenova 2016 Antioxid Redox Signal	2016	Rohlenova K, Sachaphibulkij K, Stursa J, Bezawork-Geleta A, Blecha J, Endaya B, Werner L, Cerny J, Zobalova R, Goodwin J, Spacek T, Alisadeh E, Yan B, Nguyen M, Vondrusova M, Sobol M, Jezek P, Hozak P, Truksa J, Rohlena J, Dong L, Neuzil J (2016) Selective disruption of respiratory supercomplexes as a new strategy to suppress Her2^high breast cancer. Antioxid Redox Signal 26:84-103.	Human Mouse	Liver Genital Other cell lines
Rose 2019 Am J Physiol Endocrinol Metab	2019	Rose S, Carvalho E, Diaz EC, Cotter M, Bennuri SC, Azhar G, Frye RE, Adams SH, Børsheim E (2019) A comparative study of mitochondrial respiration in circulating blood cells and skeletal muscle fibers in women. Am J Physiol Endocrinol Metab 317:E503-E512. https://doi.org/10.1152/ajpendo.00084.2019	Human	Skeletal muscle Blood cells Platelet
Rossato 2014 PLoS One	2014	Rossato FA, Zecchin KG, La Guardia PG, Ortega RM, Alberici LC, Costa RA, Catharino RR, Graner E, Castilho RF, Vercesi AE (2014) Fatty acid synthase inhibitors induce apoptosis in non-tumorigenic Melan-A cells associated with inhibition of mitochondrial respiration. PLoS One 9:e101060.	Mouse	Endothelial;epithelial;mesothelial cell Other cell lines
Rossignoli 2018 J Nutr Biochem	2018	Rossignoli CP, Dechandt CRP, Souza AO, Sampaio IH, Vicentini TM, Teodoro BG, Neto MPC, Ferrari GD, Couto-Lima CA, Alberici LC (2018) Effects of intermittent dietary supplementation with conjugated linoleic acid and fish oil (EPA/DHA) on body metabolism and mitochondrial energetics in mice. J Nutr Biochem 60:16-23.	Mouse	Skeletal muscle Nervous system Liver Fat
Rowley 2017 J Nutr Biochem	2017	Rowley TJ, Bitner BF, Ray JD, Lathen DR, Smithson AT, Dallon BW, Plowman CJ, Bikman BT, Hansen JM, Dorenkott MR, Goodrich KM, Ye L, O'Keefe SF, Neilson AP, Tessem JS (2017) Monomeric cocoa catechins enhance β-cell function by increasing mitochondrial respiration. J Nutr Biochem 49:30-41.	Rat	Islet cell;pancreas;thymus
Rowley 2017 Thesis	2017	Rowley TJ (2017) The effect of cocoa flavanols on β-cell mass and function. Master's Thesis p131.	Rat	Islet cell;pancreas;thymus
Roy 2016 Free Radic Biol Med	2016	Roy J, Fauconnier J, Oger C, Farah C, Angebault-Prouteau C, Thireau J, Bideaux P, Scheuermann V, Bultel-Poncé V, Demion M, Galano JM, Durand T, Lee JC, Le Guennec JY (2016) Non-enzymatic oxidized metabolite of DHA, 4(RS)-4-F_4t-neuroprostane protects the heart against reperfusion injury. Free Radic Biol Med 102:229-39.	Rat	Heart
Ruas 2016 PLOS ONE	2016	Ruas JS, Siqueira-Santos ES, Amigo I, Rodrigues-Silva E, Kowaltowski AJ, Castilho RF (2016) Underestimation of the maximal capacity of the mitochondrial electron transport system in oligomycin-treated cells. PLOS ONE 11:e0150967.	Human Rat	Nervous system Genital Other cell lines
Ruas 2018 Sci Rep	2018	Ruas JS, Siqueira-Santos ES, Rodrigues-Silva E, Castilho RF (2018) High glycolytic activity of tumor cells leads to underestimation of electron transport system capacity when mitochondrial ATP synthase is inhibited. https://doi.org/10.1038/s41598-018-35679-8	Human	Nervous system Other cell lines
Rudnicki 2014 United States Patent Application Publication	2014	Rudnicki MA, Yin Hang (2014) MICRORNA INHIBITORS. United States Patent Application Publication 1-49.	Mouse	Skeletal muscle Fat
Safiulina 2004 J Neurosci Methods	2004	Safiulina D, Kaasik A, Seppet E, Peet N, Zharkovsky A, Seppet EK (2004) Method for in situ detection of the mitochondrial function in neurons. J Neurosci Methods 137:87-95.		Nervous system
Sahl 2018 Anal Biochem	2018	Sahl RE, Morville T, Kraunsøe R, Dela F, Helge JW, Larsen S (2018) Variation in mitochondrial respiratory capacity and myosin heavy chain composition in repeated muscle biopsies. Anal Biochem 556:119-24.	Human Mouse Saccharomyces cerevisiae	Skeletal muscle
Sahl 2021 Adipocyte	2021	Sahl RE, Høy Helms EF, Schmücker M, Flensted-Jensen M, Ingersen A, Morville T, Dela F, Helge JW, Larsen S (2021) Reliability and variation in mitochondrial respiration in human adipose tissue. Adipocyte 10:605-11.	Human	Fat
Saks 1998 Mol Cell Biochem	1998	Saks VA, Veksler VI, Kuznetsov AV, Kay L, Sikk P, Tiivel T, Tranqui L, Olivares J, Winkler K, Wiedemann F, Kunz WS (1998) Permeabilised cell and skinned fiber techniques in studies of mitochondrial function in vivo. Mol Cell Biochem 184:81-100.		Skeletal muscle
Sangle 2010 Free Radic Biol Med	2010	Sangle GV, Chowdhury SK, Xie X, Stelmack GL, Halayko AJ, Shen GX (2010) Impairment of mitochondrial respiratory chain activity in aortic endothelial cells induced by glycated low-density lipoprotein. Free Radic Biol Med 48:781-90.	Pig	Endothelial;epithelial;mesothelial cell
Santana-Roman 2021 Insects	2021	Santana-Román ME, Maycotte P, Uribe-Carvajal S, Uribe-Alvarez C, Alvarado-Medina N, Khan M, Siddiqui A, Pando-Robles V (2021) Monitoring mitochondrial function in Aedes albopictus C6/36 cell line during dengue virus infection. Insects 12:934.
Santos Bertolini 2018 Thesis	2018	Santos Bertolini M (2018) Functional study of MICU1 and MICU2 proteins in calcium signaling of Trypanosoma cruzi. Master's Thesis 108.	Protists