Difference between revisions of "MitoEAGLE data: muscle"
From Bioblast
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:::# Draft a comprehensive review on mt-function in muscle tissue (registration at PROSPERO, link with EQUATOR). | :::# Draft a comprehensive review on mt-function in muscle tissue (registration at PROSPERO, link with EQUATOR). | ||
:::# Opening of the database to the research public for data search and moderated entry of new data sets. | :::# Opening of the database to the research public for data search and moderated entry of new data sets. | ||
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:::# Draft of review manuscript. | :::# Draft of review manuscript. | ||
== WG2 Feedback == | |||
::::# ''Skeletal muscle is the main tissue we are studying in the lab.'' - '''[[Chabi B|Beatrice Chabi]]''' (2016). | |||
::::# ''For the kind of work group, our expertise is certainly most on muscle tissue (skeletal and heart), although we also worked on all kinds of permeabilized cells (primary cells and cell lines). For all these, we have extended data sets, mainly rat, but also human, from diverse experimental setups (nutritional regimen, exercise, drugs ...).'' - '''[[Schlattner U|Uwe Schlattner]]''' (2016). | |||
::::# ''I would fit rather in WG1, as myself I am not involved in human muscle fat or blood. However, in our team we made a study involving human liver samples.'' - '''[[Bouillaud F|Frédéric Bouillaud ]]''' (2016). | |||
::::# ''In my working group we are mainly interested in muscle, especially focusing on aging and sarcopenia (using animal models). I would be happy if new cooperations could be formed through the COST Action. I could imagine working on a joint review article. Next to examining muscle from mouse models, we are studying biopsies from human heart muscle and liver, but there is no published data on these studies yet.'' - '''[[Klaus S| Susanne Klaus]]''' (2016). ''Translated by Sandra Fleischmann'' | |||
::::# ''I am very interested in being part of the management committee either as a MC member for managment tasks or in working group 4 MITOEAGLE data repository for blood cells and cultured cells. I have experience in analyzing mitochondrial function in different human tissues as cultured cells and blood cells (also subsets of specific blood populations, see list of publications), muscle and isolated mitochondria. This together with my experience in organizing summer schools and conferences could be helpful as MC member taking care of management tasks. However, if you think my expertise is more helpful in working group 4, I am looking forward to support this working group.'' - [[Renner-Sattler K|Kathrin Renner-Sattler]] (2016). | |||
::::# ''I am working in the field of mitochondrial biochemistry since many years. In detail my coworkers and I are carrying out studies on the regulation of ATP synthase and respiratory complexes in swine heart mitochondria as biological model of mammalian mitochondria. Some comparative aspects of mitochondrial bioenergetics and ATP synthase responses are also investigated in bivalve mollusk mitochondria.'' - '''[[Pagliarani A|Alessandra Pagliarani]]''' (2016). | |||
== Projects in progress == | == Projects in progress == |
Revision as of 15:15, 2 May 2016
News and Events | Working Groups | Short-Term Scientific Missions | Management Committee | Members |
COST Action CA15203 (2016-2021): MitoEAGLE
Evolution-Age-Gender-Lifestyle-Environment: mitochondrial fitness mapping
MitoEAGLE data: muscle
WG2
- MITOEAGLE data repository in muscle and other tissues
WG2 Description
- During the past 10 years, a dramatically increasing number of studies report respirometric data on human muscle tissue (e.g. Christiansen 2015 Am J Physiol). Muscle mitochondrial function is particularly studied in genetically engineered mouse models of human diseases (e.g. Jelenik 2014 Diabetes). However, despite the many published data, lack of consistency often precludes quantitative comparison among data sets with permeabilized or homogenized muscle fibres or isolated mitochondria, normalized to either tissue wet weight, dry weight, protein content, citrate synthase activity or other mitochondrial markers. In the absence of validated conversion factors, these data remain largely unconnected and can only be qualitatively linked.
- The aim of WG2 will be to provide access to complete data sets for post-study statistical analysis and use harmonization tools (WG1) for standardized documentation, to initiate a data repository on muscle tissue from humans and model organisms in health and disease. Data sets shall be obtained from already published and new studies, prompting participating labs to report experimental details beyond those already published as far as possible (using tools such as PubMed Commons). As a result, specific protocols will be summarized for handling muscle tissue. Depending on specific interests, WG2 may decide to extend their focus to other tissue types.
WG2 Participants
Country | City | Contact |
---|---|---|
Australia | Melbourne | Bishop David J |
Austria | Innsbruck | Gnaiger Erich |
Austria | Salzburg | Mayr JA |
Austria | Innsbruck | Doerrier Carolina |
Austria | Innsbruck | Laner Verena |
Belgium | Liege | Votion Dominique-Marie |
Belgium | Leuven | Bird Matthew |
Brazil | São Paulo | Ferreira Julio Cesar B |
Brazil | Jaboticabal, SP | Garcia Geovana S |
Canada | Edmonton (Alberta) | Lemieux Helene |
Canada | Rimouski | Blier Pierre U |
Canada | Antigonish | Kane Daniel A |
Canada | Rimouski | Vandermeeren E |
Canada | Vancouver | Boushel Robert C |
Croatia | Zagreb | Saric A |
Croatia | Split | Mihanovic I |
Czech Republic | Prague 10 | Krajcova Adela |
Czech Republic | Pilsen | Kuncova J |
Czech Republic | Hradec Králové | Waldauf P |
Czech Republic | Pilsen | Markova Michaela |
Czech Republic | Prague | Elkalaf Moustafa |
Denmark | Copenhagen N | Mortensen OH |
Denmark | Copenhagen | Larsen Steen |
Denmark | Hvidovre | Nehlin Jan O |
Denmark | Copenhagen | Gonzalez-Franquesa Alba |
Denmark | Malov | Hey-Mogensen M |
Denmark | Copenhagen | Dela Flemming |
Estonia | Tallinn | Kaambre Tuuli |
Estonia | Tallinn | Vendelin Marko |
Estonia | Tallinn | Tepp Kersti |
Estonia | Tallinn | Aid-Vanakova Jekaterina |
Estonia | Tallinn | Karro N |
Estonia | Tartu | Paju Kalju |
Estonia | Tallinn | Puurand Marju |
Estonia | Tallinn | Truu Laura |
Finland | Helsinki | Pirinen E |
Finland | Jyvaeskylae | Lehti Maarit |
France | Bordeaux cedex | Mourier A |
France | Grenoble Cedex 9 | Schlattner Uwe |
France | Grenoble cedex 9 | Dubouchaud Herve |
France | Montpellier Cedex 1 | Chabi Beatrice |
France | Paris | Ventura-Clapier R |
France | Montpellier | Cortade F |
France | Paris | Armand Anne-Sophie |
France | Paris | Petit Patrice X |
Germany | Leipzig | Ost Mario |
Germany | Rostock | Haider F |
Germany | Cologne | Pesta Dominik |
Germany | Nuthetal | Klaus S |
Germany | Munich | Jastroch M |
Germany | Bochum | Platen P |
Germany | Düsseldorf | Granata Cesare |
Germany | Köln | Kimoloi Sammy |
Germany | Duesseldorf | Jelenik T |
Germany | Duesseldorf | Roden Michael |
Germany | Bremerhaven | Mark Felix Christopher |
Greece | Heraklion | Tavernarakis Nektarios |
Greece | Heraklio | Sidiropoulou K |
Greece | Athens | Trougakos Ioannis P |
India | Haryana | Sharma Vipin |
Ireland | Dublin | O'Gorman Donal |
Ireland | Dublin | Porter Richard K |
Ireland | Sligo | Murphy J |
Israel | Rishon Le Zion | Hachmo Yafit |
Israel | Zrifin | Sova Marina |
Israel | Jerusalem | Saada Reisch Ann |
Italia | Udine | Salvadego Desy |
Italy | Pisa | Gastaldelli Amalia |
Italy | Rome | Scatena Roberto |
Italy | Novara | Reano Simone |
Italy | Milan | De Palma Clara |
Italy | Milan | Giovarelli Matteo |
Italy | Bologna | Genova Maria Luisa |
Japan | Sapporo | Nambu H |
Japan | Sapporo | Maekawa S |
Japan | Sapporo | Shirakawa R |
Latvia | Riga | Kuka Janis |
Latvia | Riga | Zvejniece Liga |
Latvia | Riga | Inashkina I |
Latvia | Riga | Liepins Edgars |
Luxembourg | Strassen | Devaux Yvan |
Malta | Msida | Vella Joanna |
Netherlands | Maastricht | Hoeks Joris |
Netherlands | BT Amsterdam | Jaspers Richard T |
Netherlands | Maastricht | Van Polanen N |
Netherlands | Wageningen | Keijer Jaap |
Netherlands | Amsterdam | De Goede Paul |
Netherlands | Maastricht | Grevendonk L |
Niederlande | ER Masstricht | De Wit-Verheggen V |
Niederlande | ER Masstricht | De Theije C |
Norway | Bergen | Tronstad Karl Johan |
Norway | Oslo | Eide L |
Norway | Tromsoe | Schots Pauke C |
Norway | Tromsoe | Larsen Terje S |
Norway | Ullevål | Heiestad Christina |
Norway | Oslo | Lund Jenny |
Norway | Tromsoe | Aasum E |
Norway | Oslo | Nikolic N |
Norway | Oslo | Torp May-Kristin |
Norway | Tromsoe | Jansen Kirsten M |
Norway | Oslo | Rustan AC |
Poland | Warsaw | Sek Aleksandra |
Poland | Warsaw | Kampa Rafal Pawel |
Poland | Warsaw | Dymkowska Dorota |
Poland | Lodz | Watala Cezary |
Poland | Lodz | Labieniec-Watala Magdalena |
Portugal | Cantanhede | Martins Joao D |
Portugal | Cantanhede | Ferreira LL |
Portugal | Coimbra | Martins Marques T |
Portugal | Coimbra | Palmeira Carlos |
Portugal | Porto | Coxito Pedro |
Portugal | Porto | Magalhaes Jose |
Portugal | Coimbra | Carvalho Eugenia |
Portugal | Coimbra | Pereira Susana P |
Portugal | Porto | Beleza Jorge |
Romania | Timisoara | Lighezan R |
Romania | Timisoara | Muntean Danina M |
Singapore | Singapore | Hausenloy Derek J |
Slovakia | Bratislava | Ukropcova B |
Slovakia | Bratislava | Maderova D |
Slovakia | Bratislava | Nemec Michal |
Slovakia | Bratislava | Ukropec J |
Slovakia | Bratislava | Sumbalova Zuzana |
Slovenia | Ljubljana | Pirkmajer Sergej |
Slovenia | Ljubljana | Dolinar K |
Slovenia | Ljubljana | Mars T |
South Africa | Smith James | |
Spain | Granada | Lopez Garcia Luis Carlos |
Spain | Madrid | Moran M |
Spain | Barcelona | Sebastian D |
Spain | Madrid | Cadenas S |
Spain | Barcelona | De la Torre Lara J |
Spain | Sevilla | Bustos Matilde |
Spain | Barcelona | Catalan M |
Spain | Barcelona | Zorzano Antonio |
Spain | Barcelona | Batlle M |
Spain | Armilla (Granada) | Fernandez-Ortiz Marisol |
Spain | Armilla (Granada) | Acuna-Castroviejo Dario |
Spain | Barcelona | Gama Perez Pau |
Spain | A Coruña | Blanco FJ |
Spain | Barcelona | Guitart M |
Spain | Barcelona | Garcia-Roves Pablo Miguel |
Spain | Armilla, Granada | Escames Germaine |
Sweden | Linköping | Fontes-Oliveira CC |
Sweden | Stockholm | Cardinale Daniele A |
Switzerland | Lausanne | Zalachoras I |
Switzerland | Lausanne | Gebara E |
Switzerland | Lausanne | Morato Fornaguera L |
Switzerland | Lausanne | Sandi Carmen |
Switzerland | Bern | Nuoffer Jean-Marc |
Switzerland | Lausanne | Weger M |
The Netherlands | Wageningen | Van der Ende Miranda |
The Netherlands | BT Amsterdam | Wuest Rob CI |
Turkey | Ankara | Tuncay Erkan |
USA | Chicago | Dayanidhi Sudarshan |
USA | Fairbanks | O'Brien Kristin |
USA | Torrance | Rossiter Harry B |
USA | Baton Rouge | Irving Brian A |
USA | Baltimore | Gonzalez-Freire Marta |
USA | Fort Collins | Chicco Adam J |
USA | College Station | White-Springer Sarah H |
USA | Baltimore | Fang Evandro F |
USA | Colorado Springs | Jacobs RA |
USA | Norfolk | Lai Nicola |
USA | Ann Arbor | Beard Daniel A |
USA | Gainesville | Hepple Russell T |
USA | Boca Raton | Khamoui Andy V |
USA | Orlando | Distefano Giovanna |
USA | St Louis | Welch R |
USA | Gainesville | Neyroud D |
USA | College Station | Latham C |
USA | Baton Rouge | Axelrod Christopher L |
USA | Little Rock | Porter Craig |
USA | Gainesville | Wohlgemuth Stephanie E |
USA | Orlando | Coen Paul M |
United Kingdom | London | Szabadkai Gyorgy |
United Kingdom | Loughborough | Ebanks Brad |
United Kingdom | Birmingham | Thakker A |
United Kingdom | Birmingham | Garten Antje |
United Kingdom | Plymouth, Devon | McKenna Helen T |
United Kingdom | Cambridge | Shiroma Jonathan G |
United Kingdom | Nottingham | Chakrabarti Lisa |
United Kingdom | Brighton | Moore Anthony L |
United Kingdom | Birmingham | Ashcroft S |
United Kingdom | Leeds | Boyle JP |
United Kingdom | Cambridge | Murray Andrew James |
United Kingdom | Oxford | Makrecka-Kuka Marina |
United Kingdom | Birmingham | Joanisse S |
United Kingdom | Manchester | Giakoumaki I |
United States | Providence | Siamwala J |
WG2 Management
Tasks
- Call for participating labs to deliver relevant experimental data on already published studies and to report them in a standardized format.
- Collection and indexing of the data sets as required for statistical analysis.
- Discussion of procedures, protocols and general guidelines.
- Draft a comprehensive review on mt-function in muscle tissue (registration at PROSPERO, link with EQUATOR).
- Opening of the database to the research public for data search and moderated entry of new data sets.
Milestones
- Call for data report delivered.
- Data sets entered in standardized format.
- Summary, interpretation and discussion of data for review.
Deliverables
- A MITOEAGLE database on muscle tissue from humans and model organisms.
- A set of guidelines for future studies on mitochondrial bioenergetics in muscle tissue.
- Draft of review manuscript.
WG2 Feedback
- Skeletal muscle is the main tissue we are studying in the lab. - Beatrice Chabi (2016).
- For the kind of work group, our expertise is certainly most on muscle tissue (skeletal and heart), although we also worked on all kinds of permeabilized cells (primary cells and cell lines). For all these, we have extended data sets, mainly rat, but also human, from diverse experimental setups (nutritional regimen, exercise, drugs ...). - Uwe Schlattner (2016).
- I would fit rather in WG1, as myself I am not involved in human muscle fat or blood. However, in our team we made a study involving human liver samples. - Frédéric Bouillaud (2016).
- In my working group we are mainly interested in muscle, especially focusing on aging and sarcopenia (using animal models). I would be happy if new cooperations could be formed through the COST Action. I could imagine working on a joint review article. Next to examining muscle from mouse models, we are studying biopsies from human heart muscle and liver, but there is no published data on these studies yet. - Susanne Klaus (2016). Translated by Sandra Fleischmann
- I am very interested in being part of the management committee either as a MC member for managment tasks or in working group 4 MITOEAGLE data repository for blood cells and cultured cells. I have experience in analyzing mitochondrial function in different human tissues as cultured cells and blood cells (also subsets of specific blood populations, see list of publications), muscle and isolated mitochondria. This together with my experience in organizing summer schools and conferences could be helpful as MC member taking care of management tasks. However, if you think my expertise is more helpful in working group 4, I am looking forward to support this working group. - Kathrin Renner-Sattler (2016).
- I am working in the field of mitochondrial biochemistry since many years. In detail my coworkers and I are carrying out studies on the regulation of ATP synthase and respiratory complexes in swine heart mitochondria as biological model of mammalian mitochondria. Some comparative aspects of mitochondrial bioenergetics and ATP synthase responses are also investigated in bivalve mollusk mitochondria. - Alessandra Pagliarani (2016).
Projects in progress
- » MiPMap