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O2k-Publications: Topics

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O2k-Publications: Topics

Mitochondria and Cell Research - the Oroboros Ecosystem
O2k-Publications: chronological
Publications in the MiPMap


» Please send us references on your Oroboros O2k applications for the list of O2k-Publications, which is updated by Bioblast editors and active wiki users. → Contact: Mario Plangger
» O2k-Publications alert - » Recent O2k-Publications
» O2k-briefs
» O2k-Publications - chronological: 4480


Mitochondrial physiology: MiP areas

# O2k-Publications MitoPedia: Comment O2k Total
1 mt-Medicine (358 entries) 358 506
2 Exercise physiology;nutrition;life style 724 1001
3 Comparative MiP;environmental MiP 314 464
4 Pharmacology;toxicology 812 973
5 mt-Biogenesis;mt-density 245 327
6 Genetic knockout;overexpression 616 684
7 Instruments;methods 266 403


Pathological states

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Aging;senescence 263 398
2 Alzheimer's 68 92
3 Autism 7 11
4 Cancer 339 453
5 Cardiovascular 195 264
6 COPD 9 12
7 Diabetes 341 446
8 Inherited 61 95
9 Infectious 47 65
10 Myopathy 68 79
11 Neurodegenerative 162 227
12 Obesity 244 391
13 Parkinson's 64 101
14 Sepsis 71 81
15 Other 272 344


Stress conditions

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Cell death White, brown, beige fat tissue 92 154
2 Cryopreservation 38 62
3 Hypoxia 102 198
4 Ischemia-reperfusion 319 424
5 Oxidative stress;RONS 565 804
6 Permeability transition 71 96
7 Temperature: hypothermia; hyperthermia 90 110


Organisms

Mammals
# O2k-Publications MitoPedia: Comment O2k Total
1 Human 1388 1968
2 Pig 87 100
3 Horse 26 33
4 Bovines 22 73
5 Cat 2 4
6 Dog 12 30
7 Rabbit 17 22
8 Mouse 1298 1515
9 Rat 854 1101
10 Guinea pig 23 36
11 Other mammals including only mammals that are not listed as mammalian species above 51 82
Model organisms
# O2k-Publications MitoPedia: Comment O2k Total
1 Chicken Birds) 5 7
2 Zebrafish Fishes) 14 20
3 Drosophila Hexapods) 62 80
4 Caenorhabditis elegans Nematodes) 23 31
5 Artemia Crustaceans) 11 18
6 Saccharomyces cerevisiae Fungi) 60 85
7 Comparative MiP 314 464


Non-mammals
# O2k-Publications MitoPedia: Comment O2k Total
1 Birds Chicken) 15 26
2 Reptiles turtles, lizards, snakes, crocodiles, alligators 13 18
3 Amphibians frogs, toads, salamanders 10 15
4 Fishes bony fishes, carilaginous fishes (sharks, rays, skates) and jawless fishes (hagfish, lampreys); » Zebrafish 110 146
5 Hexapods insects, springtails; » Drosophila 32 41
6 Crustaceans crabs, shrimp, barnacles, etc.; » Artemia 19 39
7 Annelids polychaetes, e.g. lugworm Arenicola marina, oligochaetes, leeches 3 20
8 Molluscs gastropods, cephalopods, bivalves 24 41
9 Nematodes » Caenorhabditis elegans 5 11
10 Other invertebrates urocordates (e.g. ascidians, sea squirts); cephalochordates (amphioxus, lancelets); echinoderms; chelicerates (e.g. spiders, scorpions, horseshoe crabs); myriapods (millipedes, centipedes); gastrotrichs; rotifers; ctenophores; nemerteans; tardigrades; platyhelminthes; cnidaria; porifera; ... 11 18
11 Fungi yeast, molds, mushrooms, etc.; » Saccharomyces cerevisiae 51 62
12 Plants 33 67
13 Protists amoebas, ciliates, trypanosomes, dinoflagellates, diatoms, green algae, etc. 40 57
14 Eubacteria true bacteria, cyanobacteria, spirochetes 24 44
15 Archaea archaebacteria 0 7


Tissues and cells

Tissues - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Fat White, brown, beige fat tissue 178 244
2 Genital 91 122
3 Heart 697 898
4 Kidney 140 172
5 Liver 620 804
6 Lung;Gill 57 77
7 Nervous system 584 704
8 Skeletal muscle 1057 1311


Cell types - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Blood cells 237 293
2 Endothelial;epithelial;mesothelial cell 251 286
3 Fibroblast 198 259
4 Islet cell;pancreas;thymus 53 64
5 Leukemia 22 25
6 Lymphocyte 56 74
7 Platelets 118 137
8 Stem cells 36 48


Cell lines - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 CHO 13 15
2 HEK 89 110
3 HeLa 36 53
4 Neuroblastoma 42 48
5 HUVEC 19 22
6 Macrophage-derived cell lines 26 35
7 Other cells and cell lines 291 337


Preparations

# O2k-Publications MitoPedia: Comment O2k Total
1 Living organism 51 246
2 Intact organ 22 37
3 Living cells 1104 1243
4 Permeabilized cells 683 717
5 Permeabilized tissue 1067 1158
6 Homogenate 357 395
7 Isolated mitochondria 1214 1511
8 SMP Submitochondrial particles 10 28
9 Chloroplasts 3 11
10 Enzyme 39 74
11 Oxidase and biochemical oxidation 38 48


Enzymes

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Adenine nucleotide translocase ANT 21 27
2 Complex I CI 454 574
3 Complex II;succinate dehydrogenase CII 396 470
4 Complex III CIII 298 355
5 Complex IV;cytochrome c oxidase CIV 402 477
6 Complex V;ATP synthase CV 220 265
7 mt-Inner membrane transporter 31 43
8 Marker enzyme 57 81
9 Supercomplex 46 69
10 TCA cycle and matrix dehydrogenases Tricarboxylic acid cycle 81 106
11 Uncoupling protein 59 65


Regulation

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 ADP ADP kinetics 149 203
2 ATP production 80 121
3 Aerobic glycolysis 48 92
4 Amino acid 9 19
5 Calcium 102 174
6 Coupling efficiency;uncoupling 82 159
7 Cyt c Cytochrome c 39 53
8 Fatty acid FA substrate kinetics 122 148
9 Flux control 53 85
10 Inhibitor Inhibitor kinetics 128 164
11 Ion;substrate transport 61 109
12 mt-Membrane potential Mitochondrial membrane potential
Questions.jpg


Click to expand or collaps
Bioblast links: Force and membrane potential - >>>>>>> - Click on [Expand] or [Collapse] - >>>>>>>
Fundamental relationships
» Force
» Affinity
» Flux
» Advancement
» Advancement per volume
» Stoichiometric number
mt-Membrane potential and protonmotive force
» Protonmotive force
» Mitochondrial membrane potential
» Chemical potential
» Faraday constant
» Format
» Uncoupler
O2k-Potentiometry
» O2k-Catalogue: O2k-TPP+ ISE-Module
» O2k-Manual: MiPNet15.03 O2k-MultiSensor-ISE
» TPP - O2k-Procedures: Tetraphenylphosphonium
» Specifications: MiPNet15.08 TPP electrode
» Poster
» Unspecific binding of TPP+
» TPP+ inhibitory effect
O2k-Fluorometry
» O2k-Catalogue: O2k-FluoRespirometer
» O2k-Manual: MiPNet22.11 O2k-FluoRespirometer manual
» Safranin - O2k-Procedures: MiPNet20.13 Safranin mt-membranepotential / Safranin
» TMRM - O2k-Procedures: TMRM
O2k-Publications
» O2k-Publications: mt-Membrane potential
» O2k-Publications: Coupling efficiency;uncoupling


111 169
13 Oxygen kinetics 103 142
14 Q-junction effect 13 56
15 Redox state 52 90
16 Substrate Fuel substrate kinetics 179 232
17 Temperature Temperature dependence 71 96
18 Threshold;excess capacity 27 30
19 Uncoupler Uncoupler kinetics 54 69


Coupling-control

# O2k-Publications MitoPedia: Coupling-control states Comment O2k Total
1 P OXPHOS OXPHOS capacity Oxidative phosphorylation capacity, saturating [ADP] 2743 2963
2 R ROUTINE ROUTINE respiration Physiological state, living cells 844 928
3 E ET ET capacity Maximal noncoupled respiration 1954 2056
4 L LEAK LEAK respiration Resting state, non-phosphorylating respiration 2469 2620


Pathway control

# O2k-Publications MitoPedia: Electron-transfer-pathway states Comment O2k Total
1 F F-pathway control state Fatty acid oxidation, level 5 575 688
2 N N-pathway control state NADH-linked, level 4 2353 2495
3 S S-pathway control state Succinate-linked, level 3 1597 1694
4 Gp Gp-pathway control state Glycerophosphate-linked, level 3 150 172
5 DQ Duorquinol-linked, level 2 24 29
6 CIV Complex IV single step Ascorbate & TMPD, level 1 665 692
7 NS NS-pathway control state Convergent CI- and CII-linked electron flow to the Q-junction 1492 1546
8 Other 130 146
9 ROX ROX Residual oxygen consumption includes non-mitochondrial respiration 1437 1488


MiPMap combinations - examples

Examples for specific combinations
# O2k-Publications MitoPedia: Comment O2k Total
1 O2k-Publications: Human skeletal muscle 1057 1311
2 O2k-Publications: Human heart 697 898
3 O2k-Publications: Skeletal muscle - human vs mouse 38 47
Browse data


O2k-Manuals and protocols and specific instrumental applications

# O2k-Publications MitoPedia: Comment O2k Total
1 Oxygraph-2k 4480 4480
2 TIP2k 44 44
3 O2k-Fluorometry 325 330
4 O2k-pH ISE-Module pH
Questions.jpg


Click to expand or collaps


4 5
5 Nitric Oxide 8 8
6 TPP+ O2k-ISE Module Tetraphenylphosphonium
Questions.jpg


Click to expand or collaps
Bioblast links: Force and membrane potential - >>>>>>> - Click on [Expand] or [Collapse] - >>>>>>>
Fundamental relationships
» Force
» Affinity
» Flux
» Advancement
» Advancement per volume
» Stoichiometric number
mt-Membrane potential and protonmotive force
» Protonmotive force
» Mitochondrial membrane potential
» Chemical potential
» Faraday constant
» Format
» Uncoupler
O2k-Potentiometry
» O2k-Catalogue: O2k-TPP+ ISE-Module
» O2k-Manual: MiPNet15.03 O2k-MultiSensor-ISE
» TPP - O2k-Procedures: Tetraphenylphosphonium
» Specifications: MiPNet15.08 TPP electrode
» Poster
» Unspecific binding of TPP+
» TPP+ inhibitory effect
O2k-Fluorometry
» O2k-Catalogue: O2k-FluoRespirometer
» O2k-Manual: MiPNet22.11 O2k-FluoRespirometer manual
» Safranin - O2k-Procedures: MiPNet20.13 Safranin mt-membranepotential / Safranin
» TMRM - O2k-Procedures: TMRM
O2k-Publications
» O2k-Publications: mt-Membrane potential
» O2k-Publications: Coupling efficiency;uncoupling


52 56
7 Ca2+ O2k-ISE Module 9 9
8 O2k-Spectrophotometer 8 8
9 O2k-Manual 20 21
8 O2k-Protocol 62 78
9 Theoretical background 13 69
10 Instruments;methods 266 403
11 O2k-Fluorometry - Fluorophores 21 21
12 PBI Shredder Homogenate preparation 20 22
# O2k-Publications MitoPedia: Comment O2k Total
1 Twin-Flow respirometry 0 21
2 Separate DatLab applications 29 35