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O2k-Publications: Topics

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O2k-Publications: Topics

Mitochondria and Cell Research - the Oroboros Ecosystem
O2k-Publications: chronological
Publications in the MiPMap


» Please send us references on your Oroboros O2k applications for the list of O2k-Publications, which is updated by Bioblast editors and active wiki users. → Contact: Mario Plangger
» O2k-Publications alert - » Recent O2k-Publications
» O2k-briefs
» O2k-Publications - chronological: 4690


Mitochondrial physiology: MiP areas

# O2k-Publications MitoPedia: Comment O2k Total
1 mt-Medicine (363 entries) 363 516
2 Exercise physiology;nutrition;life style 754 1048
3 Comparative MiP;environmental MiP 321 473
4 Pharmacology;toxicology 843 1040
5 mt-Biogenesis;mt-density 248 331
6 Genetic knockout;overexpression 651 720
7 Instruments;methods 273 416


Pathological states

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Aging;senescence 274 416
2 Alzheimer's 71 94
3 Autism 7 11
4 Cancer 356 514
5 Cardiovascular 207 289
6 COPD 10 13
7 Diabetes 347 465
8 Inherited 64 99
9 Infectious 50 69
10 Myopathy 77 89
11 Neurodegenerative 169 235
12 Obesity 253 420
13 Parkinson's 67 104
14 Sepsis 74 85
15 Other 288 360


Stress conditions

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Cell death White, brown, beige fat tissue 93 156
2 Cryopreservation 41 67
3 Hypoxia 115 226
4 Ischemia-reperfusion 326 433
5 Oxidative stress;RONS 580 837
6 Permeability transition 71 96
7 Temperature: hypothermia; hyperthermia 91 112


Organisms

Mammals
# O2k-Publications MitoPedia: Comment O2k Total
1 Human 1449 2061
2 Pig 89 103
3 Horse 27 34
4 Bovines 24 76
5 Cat 2 4
6 Dog 12 30
7 Rabbit 17 22
8 Mouse 1370 1599
9 Rat 874 1130
10 Guinea pig 22 35
11 Other mammals including only mammals that are not listed as mammalian species above 52 83
Model organisms
# O2k-Publications MitoPedia: Comment O2k Total
1 Chicken Birds) 5 7
2 Zebrafish Fishes) 15 22
3 Drosophila Hexapods) 65 91
4 Caenorhabditis elegans Nematodes) 24 33
5 Artemia Crustaceans) 12 19
6 Saccharomyces cerevisiae Fungi) 61 88
7 Comparative MiP 321 473


Non-mammals
# O2k-Publications MitoPedia: Comment O2k Total
1 Birds Chicken) 15 27
2 Reptiles turtles, lizards, snakes, crocodiles, alligators 13 18
3 Amphibians frogs, toads, salamanders 10 15
4 Fishes bony fishes, carilaginous fishes (sharks, rays, skates) and jawless fishes (hagfish, lampreys); » Zebrafish 116 153
5 Hexapods insects, springtails; » Drosophila 34 43
6 Crustaceans crabs, shrimp, barnacles, etc.; » Artemia 19 40
7 Annelids polychaetes, e.g. lugworm Arenicola marina, oligochaetes, leeches 3 20
8 Molluscs gastropods, cephalopods, bivalves 25 42
9 Nematodes » Caenorhabditis elegans 5 11
10 Other invertebrates urocordates (e.g. ascidians, sea squirts); cephalochordates (amphioxus, lancelets); echinoderms; chelicerates (e.g. spiders, scorpions, horseshoe crabs); myriapods (millipedes, centipedes); gastrotrichs; rotifers; ctenophores; nemerteans; tardigrades; platyhelminthes; cnidaria; porifera; ... 11 21
11 Fungi yeast, molds, mushrooms, etc.; » Saccharomyces cerevisiae 52 63
12 Plants 28 57
13 Protists amoebas, ciliates, trypanosomes, dinoflagellates, diatoms, green algae, etc. 42 59
14 Eubacteria true bacteria, cyanobacteria, spirochetes 25 51
15 Archaea archaebacteria 0 7


Tissues and cells

Tissues - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Fat White, brown, beige fat tissue 187 262
2 Genital 92 123
3 Heart 723 935
4 Kidney 149 182
5 Liver 644 839
6 Lung;Gill 59 82
7 Nervous system 606 732
8 Skeletal muscle 1099 1363


Cell types - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Blood cells 254 320
2 Endothelial;epithelial;mesothelial cell 258 293
3 Fibroblast 205 269
4 Islet cell;pancreas;thymus 54 66
5 Leukemia 22 25
6 Lymphocyte 58 76
7 Platelets 121 151
8 Stem cells 36 48


Cell lines - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 CHO 14 16
2 HEK 95 116
3 HeLa 38 55
4 Neuroblastoma 42 49
5 HUVEC 19 22
6 Macrophage-derived cell lines 26 37
7 Other cells and cell lines 292 338


Preparations

# O2k-Publications MitoPedia: Comment O2k Total
1 Living organism 53 248
2 Intact organ 23 38
3 Living cells 1159 1308
4 Permeabilized cells 711 749
5 Permeabilized tissue 1110 1204
6 Homogenate 374 418
7 Isolated mitochondria 1258 1565
8 SMP Submitochondrial particles 10 28
9 Chloroplasts 2 10
10 Enzyme 39 102
11 Oxidase and biochemical oxidation 39 49


Enzymes

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Adenine nucleotide translocase ANT 21 27
2 Complex I CI 460 606
3 Complex II;succinate dehydrogenase CII 410 637
4 Complex III CIII 300 362
5 Complex IV;cytochrome c oxidase CIV 405 496
6 Complex V;ATP synthase CV 219 266
7 mt-Inner membrane transporter 31 44
8 Marker enzyme 58 84
9 Supercomplex 48 77
10 TCA cycle and matrix dehydrogenases Tricarboxylic acid cycle 81 108
11 Uncoupling protein 60 66


Regulation

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 ADP ADP kinetics 152 207
2 ATP production 78 123
3 Aerobic glycolysis 49 94
4 Amino acid 9 20
5 Calcium 106 179
6 Coupling efficiency;uncoupling 82 161
7 Cyt c Cytochrome c 42 56
8 Fatty acid FA substrate kinetics 127 159
9 Flux control 54 86
10 Inhibitor Inhibitor kinetics 131 169
11 Ion;substrate transport 64 115
12 mt-Membrane potential Mitochondrial membrane potential
Questions.jpg


Click to expand or collaps
Bioblast links: Force and membrane potential - >>>>>>> - Click on [Expand] or [Collapse] - >>>>>>>
Fundamental relationships
» Force
» Affinity
» Flux
» Advancement
» Advancement per volume
» Stoichiometric number
mt-Membrane potential and protonmotive force
» Protonmotive force
» Mitochondrial membrane potential
» Chemical potential
» Faraday constant
» Format
» Uncoupler
O2k-Potentiometry
» O2k-Catalogue: O2k-TPP+ ISE-Module
» O2k-Manual: MiPNet15.03 O2k-MultiSensor-ISE
» TPP - O2k-Procedures: Tetraphenylphosphonium
» Specifications: MiPNet15.08 TPP electrode
» Poster
» Unspecific binding of TPP+
» TPP+ inhibitory effect
O2k-Fluorometry
» O2k-Catalogue: O2k-FluoRespirometer
» O2k-Manual: MiPNet22.11 O2k-FluoRespirometer manual
» Safranin - O2k-Procedures: MiPNet20.13 Safranin mt-membranepotential / Safranin
» TMRM - O2k-Procedures: TMRM
O2k-Publications
» O2k-Publications: mt-Membrane potential
» O2k-Publications: Coupling efficiency;uncoupling


116 179
13 Oxygen kinetics 106 147
14 Q-junction effect 13 56
15 Redox state 58 98
16 Substrate Fuel substrate kinetics 181 236
17 Temperature Temperature dependence 73 100
18 Threshold;excess capacity 27 30
19 Uncoupler Uncoupler kinetics 55 70


Coupling-control

# O2k-Publications MitoPedia: Coupling-control states Comment O2k Total
1 P OXPHOS OXPHOS capacity Oxidative phosphorylation capacity, saturating [ADP] 2851 3078
2 R ROUTINE ROUTINE respiration Physiological state, living cells 890 977
3 E ET ET capacity Maximal noncoupled respiration 2055 2164
4 L LEAK LEAK respiration Resting state, non-phosphorylating respiration 2597 2754


Pathway control

# O2k-Publications MitoPedia: Electron-transfer-pathway states Comment O2k Total
1 F F-pathway control state Fatty acid oxidation, level 5 606 750
2 N N-pathway control state NADH-linked, level 4 2460 2608
3 S S-pathway control state Succinate-linked, level 3 1676 1784
4 Gp Gp-pathway control state Glycerophosphate-linked, level 3 155 181
5 DQ Duorquinol-linked, level 2 26 31
6 CIV Complex IV single step Ascorbate & TMPD, level 1 699 727
7 NS NS-pathway control state Convergent CI- and CII-linked electron flow to the Q-junction 1568 1624
8 Other 130 146
9 ROX ROX Residual oxygen consumption includes non-mitochondrial respiration 1515 1567


Additional labels

# O2k-Publications MitoPedia: Comment O2k Total
1 AmR Amplex UltraRed Extrinsic fluorophore for measurement of hydrogen peroxide production 227 232
2 MgG Magnesium Green Extrinsic fluorophore for measurement of ATP production 18 19
3 CaG Calcium Green Extrinsic fluorophore for measurement of Ca2+ production 8 9
4 PBMCs Peripheral blood mononuclear cell (PBMC) 50 55
5 Photosynthesis Photosynthesis 3 52
6 Tissue normoxia Normoxia 17 27


MiPMap combinations - examples

Examples for specific combinations
# O2k-Publications MitoPedia: Comment O2k Total
1 O2k-Publications: Human skeletal muscle 1099 1363
2 O2k-Publications: Human heart 723 935
3 O2k-Publications: Skeletal muscle - human vs mouse 39 48
Browse data


O2k-Manuals and protocols and specific instrumental applications

# O2k-Publications MitoPedia: Comment O2k Total
1 Oxygraph-2k 4690 4690
2 TIP2k 44 44
3 O2k-Fluorometry 348 354
4 O2k-pH ISE-Module pH
Questions.jpg


Click to expand or collaps


4 5
5 Nitric Oxide 8 8
6 TPP+ O2k-ISE Module Tetraphenylphosphonium
Questions.jpg


Click to expand or collaps
Bioblast links: Force and membrane potential - >>>>>>> - Click on [Expand] or [Collapse] - >>>>>>>
Fundamental relationships
» Force
» Affinity
» Flux
» Advancement
» Advancement per volume
» Stoichiometric number
mt-Membrane potential and protonmotive force
» Protonmotive force
» Mitochondrial membrane potential
» Chemical potential
» Faraday constant
» Format
» Uncoupler
O2k-Potentiometry
» O2k-Catalogue: O2k-TPP+ ISE-Module
» O2k-Manual: MiPNet15.03 O2k-MultiSensor-ISE
» TPP - O2k-Procedures: Tetraphenylphosphonium
» Specifications: MiPNet15.08 TPP electrode
» Poster
» Unspecific binding of TPP+
» TPP+ inhibitory effect
O2k-Fluorometry
» O2k-Catalogue: O2k-FluoRespirometer
» O2k-Manual: MiPNet22.11 O2k-FluoRespirometer manual
» Safranin - O2k-Procedures: MiPNet20.13 Safranin mt-membranepotential / Safranin
» TMRM - O2k-Procedures: TMRM
O2k-Publications
» O2k-Publications: mt-Membrane potential
» O2k-Publications: Coupling efficiency;uncoupling


54 58
7 Ca2+ O2k-ISE Module 11 11
8 O2k-Spectrophotometer 8 8
9 O2k-Manual 24 25
8 O2k-Protocol 71 93
9 Theoretical background 13 69
10 Instruments;methods 273 416
11 O2k-Fluorometry - Fluorophores 22 22
12 PBI Shredder Homogenate preparation 20 22
# O2k-Publications MitoPedia: Comment O2k Total
1 Twin-Flow respirometry 0 21
2 Separate DatLab applications 29 35