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O2k-Publications: Topics
- Mitochondria and Cell Research - the Oroboros Ecosystem
- » Please send us references on your Oroboros O2k applications for the list of O2k-Publications, which is updated by Bioblast editors and active wiki users. → Contact: Mario Plangger
- » O2k-Publications alert - » Recent O2k-Publications
- » O2k-briefs
- » O2k-Publications - chronological: 4480
Mitochondrial physiology: MiP areas
# O2k-Publications MitoPedia: Comment O2k Total 1 mt-Medicine (358 entries) 358 506 2 Exercise physiology;nutrition;life style 724 1001 3 Comparative MiP;environmental MiP 314 464 4 Pharmacology;toxicology 812 973 5 mt-Biogenesis;mt-density 245 327 6 Genetic knockout;overexpression 616 684 7 Instruments;methods 266 403
Pathological states
- Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 Aging;senescence 263 398 2 Alzheimer's 68 92 3 Autism 7 11 4 Cancer 339 453 5 Cardiovascular 195 264 6 COPD 9 12 7 Diabetes 341 446 8 Inherited 61 95 9 Infectious 47 65 10 Myopathy 68 79 11 Neurodegenerative 162 227 12 Obesity 244 391 13 Parkinson's 64 101 14 Sepsis 71 81 15 Other 272 344
Stress conditions
- Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 Cell death White, brown, beige fat tissue 92 154 2 Cryopreservation 38 62 3 Hypoxia 102 198 4 Ischemia-reperfusion 319 424 5 Oxidative stress;RONS 565 804 6 Permeability transition 71 96 7 Temperature: hypothermia; hyperthermia 90 110
Organisms
- Mammals
- Model organisms
# O2k-Publications MitoPedia: Comment O2k Total 1 Chicken (» Birds) 5 7 2 Zebrafish (» Fishes) 14 20 3 Drosophila (» Hexapods) 62 80 4 Caenorhabditis elegans (» Nematodes) 23 31 5 Artemia (» Crustaceans) 11 18 6 Saccharomyces cerevisiae (» Fungi) 60 85 7 Comparative MiP 314 464
- Non-mammals
# O2k-Publications MitoPedia: Comment O2k Total 1 Birds (» Chicken) 15 26 2 Reptiles turtles, lizards, snakes, crocodiles, alligators 13 18 3 Amphibians frogs, toads, salamanders 10 15 4 Fishes bony fishes, carilaginous fishes (sharks, rays, skates) and jawless fishes (hagfish, lampreys); » Zebrafish 110 146 5 Hexapods insects, springtails; » Drosophila 32 41 6 Crustaceans crabs, shrimp, barnacles, etc.; » Artemia 19 39 7 Annelids polychaetes, e.g. lugworm Arenicola marina, oligochaetes, leeches 3 20 8 Molluscs gastropods, cephalopods, bivalves 24 41 9 Nematodes » Caenorhabditis elegans 5 11 10 Other invertebrates urocordates (e.g. ascidians, sea squirts); cephalochordates (amphioxus, lancelets); echinoderms; chelicerates (e.g. spiders, scorpions, horseshoe crabs); myriapods (millipedes, centipedes); gastrotrichs; rotifers; ctenophores; nemerteans; tardigrades; platyhelminthes; cnidaria; porifera; ... 11 18 11 Fungi yeast, molds, mushrooms, etc.; » Saccharomyces cerevisiae 51 62 12 Plants 33 67 13 Protists amoebas, ciliates, trypanosomes, dinoflagellates, diatoms, green algae, etc. 40 57 14 Eubacteria true bacteria, cyanobacteria, spirochetes 24 44 15 Archaea archaebacteria 0 7
Tissues and cells
- Tissues - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 Fat White, brown, beige fat tissue 178 244 2 Genital 91 122 3 Heart 697 898 4 Kidney 140 172 5 Liver 620 804 6 Lung;Gill 57 77 7 Nervous system 584 704 8 Skeletal muscle 1057 1311
- Cell types - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 Blood cells 237 293 2 Endothelial;epithelial;mesothelial cell 251 286 3 Fibroblast 198 259 4 Islet cell;pancreas;thymus 53 64 5 Leukemia 22 25 6 Lymphocyte 56 74 7 Platelets 118 137 8 Stem cells 36 48
- Cell lines - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 CHO 13 15 2 HEK 89 110 3 HeLa 36 53 4 Neuroblastoma 42 48 5 HUVEC 19 22 6 Macrophage-derived cell lines 26 35 7 Other cells and cell lines 291 337
Preparations
# O2k-Publications MitoPedia: Comment O2k Total 1 Living organism 51 246 2 Intact organ 22 37 3 Living cells 1104 1243 4 Permeabilized cells 683 717 5 Permeabilized tissue 1067 1158 6 Homogenate 357 395 7 Isolated mitochondria 1214 1511 8 SMP Submitochondrial particles 10 28 9 Chloroplasts 3 11 10 Enzyme 39 74 11 Oxidase and biochemical oxidation 38 48
Enzymes
- Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 Adenine nucleotide translocase ANT 21 27 2 Complex I CI 454 574 3 Complex II;succinate dehydrogenase CII 396 470 4 Complex III CIII 298 355 5 Complex IV;cytochrome c oxidase CIV 402 477 6 Complex V;ATP synthase CV 220 265 7 mt-Inner membrane transporter 31 43 8 Marker enzyme 57 81 9 Supercomplex 46 69 10 TCA cycle and matrix dehydrogenases Tricarboxylic acid cycle 81 106 11 Uncoupling protein 59 65
Regulation
- Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 ADP ADP kinetics 149 203 2 ATP production 80 121 3 Aerobic glycolysis 48 92 4 Amino acid 9 19 5 Calcium 102 174 6 Coupling efficiency;uncoupling 82 159 7 Cyt c Cytochrome c 39 53 8 Fatty acid FA substrate kinetics 122 148 9 Flux control 53 85 10 Inhibitor Inhibitor kinetics 128 164 11 Ion;substrate transport 61 109 12 mt-Membrane potential Mitochondrial membrane potential
- Bioblast links: Force and membrane potential - >>>>>>> - Click on [Expand] or [Collapse] - >>>>>>>
- Fundamental relationships
- mt-Membrane potential and protonmotive force
- O2k-Potentiometry
- » O2k-Catalogue: O2k-TPP+ ISE-Module
- » O2k-Manual: MiPNet15.03 O2k-MultiSensor-ISE
- » TPP - O2k-Procedures: Tetraphenylphosphonium
- » Specifications: MiPNet15.08 TPP electrode
- » Poster
- » Unspecific binding of TPP+
- » TPP+ inhibitory effect
- O2k-Potentiometry
- O2k-Fluorometry
- » O2k-Catalogue: O2k-FluoRespirometer
- » O2k-Manual: MiPNet22.11 O2k-FluoRespirometer manual
- » Safranin - O2k-Procedures: MiPNet20.13 Safranin mt-membranepotential / Safranin
- » TMRM - O2k-Procedures: TMRM
- O2k-Fluorometry
- O2k-Publications
111 169 13 Oxygen kinetics 103 142 14 Q-junction effect 13 56 15 Redox state 52 90 16 Substrate Fuel substrate kinetics 179 232 17 Temperature Temperature dependence 71 96 18 Threshold;excess capacity 27 30 19 Uncoupler Uncoupler kinetics 54 69
Coupling-control
# O2k-Publications MitoPedia: Coupling-control states Comment O2k Total 1 P 
OXPHOS capacity
Oxidative phosphorylation capacity, saturating [ADP] 2743 2963 2 R 
ROUTINE respiration
Physiological state, living cells 844 928 3 E 
ET capacity
Maximal noncoupled respiration 1954 2056 4 L 
LEAK respiration
Resting state, non-phosphorylating respiration 2469 2620
Pathway control
# O2k-Publications MitoPedia: Electron-transfer-pathway states Comment O2k Total 1 F F-pathway control state Fatty acid oxidation, level 5 575 688 2 N N-pathway control state NADH-linked, level 4 2353 2495 3 S S-pathway control state Succinate-linked, level 3 1597 1694 4 Gp Gp-pathway control state Glycerophosphate-linked, level 3 150 172 5 DQ Duorquinol-linked, level 2 24 29 6 CIV Complex IV single step Ascorbate & TMPD, level 1 665 692 7 NS NS-pathway control state Convergent CI- and CII-linked electron flow to the Q-junction 1492 1546 8 Other 130 146 9 ROX 
Residual oxygen consumption
includes non-mitochondrial respiration 1437 1488
MiPMap combinations - examples
- Examples for specific combinations
# O2k-Publications MitoPedia: Comment O2k Total 1 O2k-Publications: Human skeletal muscle 1057 1311 2 O2k-Publications: Human heart 697 898 3 O2k-Publications: Skeletal muscle - human vs mouse 38 47
- Browse data
O2k-Manuals and protocols and specific instrumental applications
# O2k-Publications MitoPedia: Comment O2k Total 1 Twin-Flow respirometry 0 21 2 Separate DatLab applications 29 35
