Difference between revisions of "MiPNet08.09 CellRespiration"
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{{Publication | {{Publication | ||
|title=[[Image:O2k-Protocols.jpg|right|80px|link=O2k-Procedures|O2k-Procedures contents]] High-resolution respirometry and coupling control protocol with living cells: ROUTINE, LEAK, ET-pathway, ROX. | |title=[[Image:O2k-Protocols.jpg|right|80px|link=O2k-Procedures|O2k-Procedures contents]] High-resolution respirometry and coupling-control protocol with living cells: ROUTINE, LEAK, ET-pathway, ROX. | ||
|info=[[File:PDF.jpg|100px|link=http://wiki.oroboros.at/images/d/da/MiPNet08.09_CellRespiration.pdf |Bioblast pdf]] »[http://www.bioblast.at/index.php/File:MiPNet08.09_CellRespiration.pdf Versions] | |info=[[File:PDF.jpg|100px|link=http://wiki.oroboros.at/images/d/da/MiPNet08.09_CellRespiration.pdf |Bioblast pdf]] »[http://www.bioblast.at/index.php/File:MiPNet08.09_CellRespiration.pdf Versions] | ||
|authors=Oroboros | |authors=Oroboros | ||
|year=2016-08-11 | |year=2016-08-11 | ||
|journal=Mitochondr Physiol Network | |journal=Mitochondr Physiol Network | ||
|abstract='''Doerrier C, Gnaiger E (2003-2016) High-resolution respirometry and coupling control protocol with living cells: ROUTINE, LEAK, ET-pathway, ROX. Mitochondr Physiol Network 08.09(11):1-8.''' | |abstract='''Doerrier C, Gnaiger E (2003-2016) High-resolution respirometry and coupling-control protocol with living cells: ROUTINE, LEAK, ET-pathway, ROX. Mitochondr Physiol Network 08.09(11):1-8.''' | ||
An experiment on respiration of [[living cells]] is reported from an O2k-Workshop on high-resolution respirometry. Leukemia cells were incubated at a density of 1 million cells/ml in 2 ml culture medium in two O2k-Chambers operated in parallel. Cellular ROUTINE respiration, ''J''<sub>R</sub>, resulted in volume-specific oxygen consumption of 20 pmol·s<sup>-1</sup>·ml<sup>-1</sup>. Oxygen concentration changed by merely 6.4 and 6.5 µM in the two O2k-Chambers over a period of 5 min (<1% air saturation per minute). Inhibition by oligomycin (''J<sub>L</sub>''), and rotenone (residual oxygen consumption, ''J''<sub>ROX</sub>; after uncoupling) reduced respiration to 5 and 1 pmol·s<sup>-1</sup>·ml<sup>-1</sup>, while inducing the noncoupled state by the uncoupler FCCP revealed the capacity of the Electron transfer-pathway (ET-pathway) at ''J<sub>E</sub>'' of 50 pmol·s<sup>-1</sup>·ml<sup>-1</sup>. The ROUTINE control ratio, ''R/E'', was 0.4 (uncoupling control ratio, UCR=''E/R''=2.5), and the LEAK control ratio, ''L/E'', was 0.1 (''E/L''=12.0). This indicates tight coupling of OXPHOS, and a large ET-pathway excess capacity over ROUTINE respiration. The net ROUTINE control ratio, net''R''=(''R-L'')/''E'' was 0.30, indicating that 30% of ET-pathway capacity was activated for ATP production. | An experiment on respiration of [[living cells]] is reported from an O2k-Workshop on high-resolution respirometry. Leukemia cells were incubated at a density of 1 million cells/ml in 2 ml culture medium in two O2k-Chambers operated in parallel. Cellular ROUTINE respiration, ''J''<sub>R</sub>, resulted in volume-specific oxygen consumption of 20 pmol·s<sup>-1</sup>·ml<sup>-1</sup>. Oxygen concentration changed by merely 6.4 and 6.5 µM in the two O2k-Chambers over a period of 5 min (<1% air saturation per minute). Inhibition by oligomycin (''J<sub>L</sub>''), and rotenone (residual oxygen consumption, ''J''<sub>ROX</sub>; after uncoupling) reduced respiration to 5 and 1 pmol·s<sup>-1</sup>·ml<sup>-1</sup>, while inducing the noncoupled state by the uncoupler FCCP revealed the capacity of the Electron transfer-pathway (ET-pathway) at ''J<sub>E</sub>'' of 50 pmol·s<sup>-1</sup>·ml<sup>-1</sup>. The ROUTINE control ratio, ''R/E'', was 0.4 (uncoupling control ratio, UCR=''E/R''=2.5), and the LEAK control ratio, ''L/E'', was 0.1 (''E/L''=12.0). This indicates tight coupling of OXPHOS, and a large ET-pathway excess capacity over ROUTINE respiration. The net ROUTINE control ratio, net''R''=(''R-L'')/''E'' was 0.30, indicating that 30% of ET-pathway capacity was activated for ATP production. | ||
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Automatic correction for instrumental background amounted to 13% for ROUTINE respiration, but to >50% and 180% for ''J<sub>L</sub>'' and ''J''<sub>ROX</sub>, respectively, illustrating the importance of real-time correction. The experiment illustrates the sensitivity and resproducibility of high-resolution respirometry with the OROBOROS O2k. Calibrations and routine corrections provide the basis of the high accuracy required for mitochondrial respiratory physiology. Real-time analyses were performed, combining high-resolution with instant diagnostic information. In this update graphs are presented illustrating some features of DatLab. | Automatic correction for instrumental background amounted to 13% for ROUTINE respiration, but to >50% and 180% for ''J<sub>L</sub>'' and ''J''<sub>ROX</sub>, respectively, illustrating the importance of real-time correction. The experiment illustrates the sensitivity and resproducibility of high-resolution respirometry with the OROBOROS O2k. Calibrations and routine corrections provide the basis of the high accuracy required for mitochondrial respiratory physiology. Real-time analyses were performed, combining high-resolution with instant diagnostic information. In this update graphs are presented illustrating some features of DatLab. | ||
:» Product: [[Oroboros O2k]], [[Oroboros O2k-Catalogue | O2k-Catalogue]] | :» Product: [[Oroboros O2k]], [[Oroboros O2k-Catalogue | O2k-Catalogue]] | ||
|editor=[[Gnaiger E]], | |||
|mipnetlab=AT_Innsbruck_Oroboros | |mipnetlab=AT_Innsbruck_Oroboros | ||
}} | }} | ||
| Line 20: | Line 21: | ||
|couplingstates=LEAK, ROUTINE, ET | |couplingstates=LEAK, ROUTINE, ET | ||
|instruments=Oxygraph-2k, O2k-Protocol | |instruments=Oxygraph-2k, O2k-Protocol | ||
|additional=O2k-Demo, O2k-Core, SUIT-003 O2 ce D009, SUIT-003, SUIT-006 General O2 pce D053, | |additional=O2k-Demo, O2k-Core, SUIT-003 O2 ce D009, SUIT-003, SUIT-006 General O2 pce D053, Leukemia, | ||
}} | }} | ||
'''»''' [[MitoPedia: Respiratory states]] | '''»''' [[MitoPedia: Respiratory states]] | ||
[[Image:R.jpg|link=ROUTINE respiration|ROUTINE]] [[Image:L.jpg|link=LEAK respiration|LEAK]] [[Image:E.jpg|link=ET | [[Image:R.jpg|link=ROUTINE respiration|ROUTINE]] [[Image:L.jpg|link=LEAK respiration|LEAK]] [[Image:E.jpg|link=ET capacity|ET capacity]] [[Image:ROX.jpg|link=Residual oxygen consumption|ROX]] | ||
[[Image:MiPNet0809_FCR.jpg|left|800px|]] Flux control ratios (''FCR'') normalized to state ET-pathway (''E'') in chambers A and B (superimposed). ROUTINE respiration in these cells is regulated at 0.4 of ET | [[Image:MiPNet0809_FCR.jpg|left|800px|]] Flux control ratios (''FCR'') normalized to state ET-pathway (''E'') in chambers A and B (superimposed). ROUTINE respiration in these cells is regulated at 0.4 of ET capacity (''R/E''). Oligomycin (Omy) inhibits respiration to 0.1 ET capacity (''L/E''). | ||
== Coupling control protocol == | == Coupling-control protocol == | ||
[[File:1ce;2ceOmy;3ceU-.jpg|right|300px|link=1ce;2ceOmy;3ceU-]] | [[File:1ce;2ceOmy;3ceU-.jpg|right|300px|link=1ce;2ceOmy;3ceU-]] | ||
****: ceCCP: RLE [[1ce;2ceOmy;3ceU-]] | ****: ceCCP: RLE [[1ce;2ceOmy;3ceU-]] | ||
| Line 98: | Line 99: | ||
== Further information == | == Further information == | ||
::::» [[Living cells]] | ::::» [[Living cells]] | ||
::::» [[Coupling control protocol]] | ::::» [[Coupling-control protocol]] | ||
Latest revision as of 14:52, 8 June 2020
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»Versions
Oroboros (2016-08-11) Mitochondr Physiol Network
Abstract: Doerrier C, Gnaiger E (2003-2016) High-resolution respirometry and coupling-control protocol with living cells: ROUTINE, LEAK, ET-pathway, ROX. Mitochondr Physiol Network 08.09(11):1-8.
An experiment on respiration of living cells is reported from an O2k-Workshop on high-resolution respirometry. Leukemia cells were incubated at a density of 1 million cells/ml in 2 ml culture medium in two O2k-Chambers operated in parallel. Cellular ROUTINE respiration, JR, resulted in volume-specific oxygen consumption of 20 pmol·s-1·ml-1. Oxygen concentration changed by merely 6.4 and 6.5 µM in the two O2k-Chambers over a period of 5 min (<1% air saturation per minute). Inhibition by oligomycin (JL), and rotenone (residual oxygen consumption, JROX; after uncoupling) reduced respiration to 5 and 1 pmol·s-1·ml-1, while inducing the noncoupled state by the uncoupler FCCP revealed the capacity of the Electron transfer-pathway (ET-pathway) at JE of 50 pmol·s-1·ml-1. The ROUTINE control ratio, R/E, was 0.4 (uncoupling control ratio, UCR=E/R=2.5), and the LEAK control ratio, L/E, was 0.1 (E/L=12.0). This indicates tight coupling of OXPHOS, and a large ET-pathway excess capacity over ROUTINE respiration. The net ROUTINE control ratio, netR=(R-L)/E was 0.30, indicating that 30% of ET-pathway capacity was activated for ATP production.
Automatic correction for instrumental background amounted to 13% for ROUTINE respiration, but to >50% and 180% for JL and JROX, respectively, illustrating the importance of real-time correction. The experiment illustrates the sensitivity and resproducibility of high-resolution respirometry with the OROBOROS O2k. Calibrations and routine corrections provide the basis of the high accuracy required for mitochondrial respiratory physiology. Real-time analyses were performed, combining high-resolution with instant diagnostic information. In this update graphs are presented illustrating some features of DatLab.
- » Product: Oroboros O2k, O2k-Catalogue
• Bioblast editor: Gnaiger E • O2k-Network Lab: AT_Innsbruck_Oroboros
Labels: MiParea: Respiration, Instruments;methods
Organism: Human
Tissue;cell: Blood cells, Lymphocyte
Preparation: Intact cells
Coupling state: LEAK, ROUTINE, ET
HRR: Oxygraph-2k, O2k-Protocol
O2k-Demo, O2k-Core, SUIT-003 O2 ce D009, SUIT-003, SUIT-006 General O2 pce D053, Leukemia
» MitoPedia: Respiratory states
Flux control ratios (FCR) normalized to state ET-pathway (E) in chambers A and B (superimposed). ROUTINE respiration in these cells is regulated at 0.4 of ET capacity (R/E). Oligomycin (Omy) inhibits respiration to 0.1 ET capacity (L/E).
Coupling-control protocol
- ceCCP: RLE 1ce;2ceOmy;3ceU-
- » Instructions for using templates for data evaluation are given in MiPNet08.09 (see above) and MiPNet10.04 CellRespiration.
ceCCP states
| Respiratory state | Mark names | Explanations |
|---|---|---|
| R | 1ce | ROUTINE |
| L | 2ceOmy | Oligomycin |
| E | 3ceU | Uncoupler titration |
| ROX | 4ceRotAma | Rotenone, Antimycin A, residual oxygen consumption |
DatLab-Analysis templates and DatLab Demo Files
DatLab 7
- Calibration-File: MiPNet08.09_CellRespiration_Calib.DLD
- Demo-File: MiPNet08.09_CellRespiration.DLD
- DatLab-Analysis template: CCP02.xlsx
DatLab 6
- Calibration-File: MIPNET08.09_2003-03-29_P1-01_CALIB.DLD
- Demo-File: MIPNET08.09_2003-03-29_P1-02_CELLS.DLD
- Background Excel demo and template: MiPNet08.09_O2k-Background_Cells.xlsx
- DatLab-Analysis template: MiPNet08.09_O2k-Analysis_Cells.xlsx
DatLab 5
- Calibration-File: MIPNET08.09_2003-03-29_P1-01_CALIB.DLD
- Demo-File: MIPNET08.09_2003-03-29_P1-02_CELLS.DLD
- Background Excel demo and template: O2k-Background_Cells_0809.xlsx
- DatLab-Analysis template: O2k-Analysis_Cells_0809.xlsx
